Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_C01
(910 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 73 7e-14
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 58 2e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 57 4e-09
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 54 3e-08
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 52 9e-08
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 52 1e-07
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 51 2e-07
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 47 3e-06
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 47 3e-06
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 46 7e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 46 1e-05
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 44 3e-05
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 44 3e-05
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 44 4e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 41 2e-04
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 40 6e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 39 0.001
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 36 0.008
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 36 0.011
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 35 0.014
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.024
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 32 0.098
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 31 0.17
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 2.1
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 27 3.7
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 26 8.5
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 72.5 bits (170), Expect = 7e-14
Identities = 32/58 (55%), Positives = 47/58 (81%)
Frame = +1
Query: 193 FGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSL 366
F + +IE++V+DEADRML++ FA+++ EII+ C RQTMLFSATM+++V DL +SL
Sbjct: 401 FTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSL 458
Score = 65.7 bits (153), Expect = 9e-12
Identities = 32/77 (41%), Positives = 47/77 (61%)
Frame = +2
Query: 356 RFPXKKPVKLFVNSNKEVAFNLRQEFVRIRKERECDREAMLAALVCRTFRDRTVVFVXTK 535
R +PV++FV++ K A L QEFVR+R +RE R AML L F RT++F +K
Sbjct: 455 RLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELFHRRTIIFFRSK 514
Query: 536 RXAHRLHVMLGMLGVXA 586
AH++ V+ G+L + A
Sbjct: 515 AFAHKMRVIFGLLSLNA 531
Score = 46.8 bits (106), Expect = 4e-06
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +3
Query: 99 VKYQESVLRQNPDIVIATPGRLIDHIRNT 185
+K QE LR+ PDIVIATPGR IDH+RN+
Sbjct: 370 LKLQEQELRKRPDIVIATPGRFIDHMRNS 398
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 57.6 bits (133), Expect = 2e-09
Identities = 30/62 (48%), Positives = 41/62 (66%)
Frame = +1
Query: 199 LHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLXETR 378
L + LVLDEADRMLD F Q+++I+ Q P RQT++FSAT +EV+ LA L +
Sbjct: 267 LRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYI 326
Query: 379 QI 384
Q+
Sbjct: 327 QV 328
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 56.8 bits (131), Expect = 4e-09
Identities = 28/58 (48%), Positives = 38/58 (65%)
Frame = +1
Query: 193 FGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSL 366
F +++L+LDEADR+LD F + I+ RQTMLFSAT ++ VKDLA +SL
Sbjct: 181 FDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARLSL 238
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 54.0 bits (124), Expect = 3e-08
Identities = 27/59 (45%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Frame = +1
Query: 193 FGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQC-SPKRQTMLFSATMSEEVKDLAAVSL 366
F ++ LV+DEADR+L+ F ++M++I++ S RQT+LFSAT + +V+DLA +SL
Sbjct: 232 FVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLARISL 290
Score = 31.5 bits (68), Expect = 0.17
Identities = 10/17 (58%), Positives = 17/17 (100%)
Frame = +3
Query: 135 DIVIATPGRLIDHIRNT 185
++++ATPGRL+DH++NT
Sbjct: 213 NLLVATPGRLLDHLQNT 229
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 52.4 bits (120), Expect = 9e-08
Identities = 26/58 (44%), Positives = 35/58 (60%)
Frame = +1
Query: 199 LHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLXE 372
L SIE +V DEADR+ + FA Q+ EI+ RQT+LFSAT+ + D A L +
Sbjct: 211 LSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQD 268
Score = 29.1 bits (62), Expect = 0.91
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 108 QESVLRQNPDIVIATPGRLIDHIR 179
Q S+L PDIV+ATPGR + H++
Sbjct: 182 QFSLLSGKPDIVVATPGRFL-HLK 204
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 51.6 bits (118), Expect = 1e-07
Identities = 29/62 (46%), Positives = 35/62 (56%)
Frame = +1
Query: 199 LHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLXETR 378
LH LVLDEADRM D F Q+ II P RQT+LFSAT ++ LA L +
Sbjct: 566 LHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPV 625
Query: 379 QI 384
+I
Sbjct: 626 EI 627
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 99 VKYQESVLRQNPDIVIATPGRLID 170
+K Q + L++ +IV+ TPGR+ID
Sbjct: 531 IKDQIADLKRGAEIVVCTPGRMID 554
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 51.2 bits (117), Expect = 2e-07
Identities = 24/60 (40%), Positives = 41/60 (68%)
Frame = +1
Query: 193 FGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLXE 372
F L +++ L++DEADR+LD F + +I++ +R+T+LFSATM+ +V+ L SL +
Sbjct: 185 FSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASLHQ 244
Score = 35.1 bits (77), Expect = 0.014
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 96 DVKYQESVLRQNPDIVIATPGRLIDHIRNT 185
D+ Q L + P +++ TPGRL+DH+ NT
Sbjct: 153 DMVTQAVALSKKPHVLVCTPGRLMDHLENT 182
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 47.2 bits (107), Expect = 3e-06
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +1
Query: 208 IEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVS 363
+E+L+LDEAD ++D F ++ II Q +R+T LFSATM++ V ++
Sbjct: 155 LEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLFSATMNDTVSSFLKIA 206
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 114 SVLRQNPDIVIATPGRLIDHIRNTPS 191
S +NP +VI TPGRL + + + S
Sbjct: 127 SFREKNPSVVIGTPGRLNEMLSHISS 152
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 47.2 bits (107), Expect = 3e-06
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Frame = +1
Query: 190 RFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCS----PKRQTMLFSATMSEEVKDLA 354
R L +I+ LVLDEADRMLD F Q++ I+ +RQT++FSAT +++ LA
Sbjct: 324 RISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLA 382
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 96 DVKYQESVLRQNPDIVIATPGRLIDHI 176
D++ Q + Q D++ ATPGRL+D I
Sbjct: 294 DIRAQIRQIDQGCDLLSATPGRLVDLI 320
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 46.0 bits (104), Expect = 7e-06
Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Frame = +1
Query: 196 GLHSIEVLVLDEADRMLDEYFAEQMKEI--IRQCSPKRQTMLFSATMSEEVKDL 351
GL I+ LV+DEADR+L FA+ + + + S RQT+LF+AT+++ ++ L
Sbjct: 150 GLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTATVTDAIRQL 203
Score = 30.3 bits (65), Expect = 0.39
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 96 DVKYQESVLRQNPDIVIATPGRLIDHIRN 182
D+ Q L + P +V+ATPGRL D IR+
Sbjct: 114 DMIRQSIDLSKRPHVVVATPGRLADLIRS 142
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 45.6 bits (103), Expect = 1e-05
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Frame = +1
Query: 217 LVLDEADRMLDEYFAEQMKEIIRQC-----SPKRQTMLFSATMSEEVKDLAAVSLXETRQ 381
LVLDEADRMLD F + ++ II + RQT+ FSAT E V+ LAA L + +
Sbjct: 313 LVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVK 372
Query: 382 I 384
I
Sbjct: 373 I 373
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 102 KYQESVLRQNPDIVIATPGRLIDHIRN 182
K +++ +N ++I TPGRL+D I +
Sbjct: 276 KSEQARAAKNASVIIGTPGRLLDLIND 302
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 44.0 bits (99), Expect = 3e-05
Identities = 18/52 (34%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = +1
Query: 199 LHSIEVLVLDEADRMLDEY-FAEQMKEIIRQCSPKRQTMLFSATMSEEVKDL 351
++S++ VLDE D++L+ ++E+ R P++Q M+FSAT+S E++ +
Sbjct: 195 VNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPI 246
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 44.0 bits (99), Expect = 3e-05
Identities = 18/49 (36%), Positives = 35/49 (71%)
Frame = +1
Query: 205 SIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDL 351
++++L+LDEAD +L++ F EQ+ +I R P Q ++ SAT+ ++V ++
Sbjct: 163 NVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEM 211
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 43.6 bits (98), Expect = 4e-05
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = +1
Query: 205 SIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLXETRQI 384
++++ VLDEAD ML F +Q+ +I + P Q +L SATM ++V ++ + + +I
Sbjct: 161 AVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRI 220
Query: 385 V 387
+
Sbjct: 221 L 221
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 41.1 bits (92), Expect = 2e-04
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +1
Query: 208 IEVLVLDEADRMLDEYFAEQMKEIIRQC-SPKRQTMLFSATMSEEVKDLAAVSLXETRQI 384
+E V+DEADR+ + F EQ I+ C S LFSAT+ V++LA V + +I
Sbjct: 190 VEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVDPIRI 249
Query: 385 V 387
+
Sbjct: 250 I 250
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 39.5 bits (88), Expect = 6e-04
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 208 IEVLVLDEADRMLDEYFAEQMKEIIRQCSPKR-QTMLFSATMSEEVKDLA 354
I+V VLDEAD MLD+ I+ P+ Q +LFSAT SE V+ A
Sbjct: 255 IKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYA 304
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 38.7 bits (86), Expect = 0.001
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +1
Query: 199 LHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDL 351
L ++ LV+DEAD ML + E MK + R Q+ L SAT+S+ + L
Sbjct: 162 LDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIASL 212
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 108 QESVLRQNPDIVIATPGRLIDHI 176
Q +L PDIVIATP R + H+
Sbjct: 133 QRPLLLDLPDIVIATPSRCVVHV 155
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 35.9 bits (79), Expect = 0.008
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Frame = +1
Query: 208 IEVLVLDEADRMLDEYFAEQMKEII----RQCSPKRQTMLFSATMSE 336
I+ LVLDEADR+L + E++ +++ +RQT +FSAT E
Sbjct: 269 IKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDE 315
Score = 29.5 bits (63), Expect = 0.69
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 99 VKYQESVLRQNPDIVIATPGRL 164
V+ Q+ +L ++P +V+ATPGRL
Sbjct: 232 VQKQQRLLNKHPHVVVATPGRL 253
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 35.5 bits (78), Expect = 0.011
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +3
Query: 102 KYQESVLRQNPDIVIATPGRLIDHIRNTPSVRAPQHR 212
K +++ +R+ +I+I TPGRL DH+ NT ++ Q R
Sbjct: 260 KSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVR 296
Score = 30.3 bits (65), Expect = 0.39
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 13/65 (20%)
Frame = +1
Query: 217 LVLDEADRMLDEYFAEQMKEII----RQCS--------PKRQ-TMLFSATMSEEVKDLAA 357
+VLDE DR++D F E + +I+ Q S P R+ TML SATM + VK L+
Sbjct: 298 VVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSD 357
Query: 358 VSLXE 372
+L +
Sbjct: 358 SALKD 362
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 35.1 bits (77), Expect = 0.014
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 205 SIEVLVLDEADRMLDEYFAEQMKEIIRQ-CSPKRQTMLFSATMSEEVKDL 351
S + +LDEADR++D FAE + I + K + + FSATM +V ++
Sbjct: 188 STDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVSNV 237
Score = 33.1 bits (72), Expect = 0.056
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +3
Query: 99 VKYQESVLRQNPDIVIATPGRLIDHIRN 182
++ + ++ R N +++IATPGRL DH++N
Sbjct: 153 MREENAIRRGNANLLIATPGRLEDHLQN 180
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 34.3 bits (75), Expect = 0.024
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +3
Query: 135 DIVIATPGRLIDHIRNTPS 191
D++++TPGRL+DHIRN S
Sbjct: 262 DVLVSTPGRLVDHIRNDES 280
Score = 31.9 bits (69), Expect = 0.13
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 193 FGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCS-PK 300
F L + +V+DEADR+LD+ F + + ++ + S PK
Sbjct: 281 FSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPK 317
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 32.3 bits (70), Expect = 0.098
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 19/79 (24%)
Frame = +1
Query: 193 FGLHSIEVLVLDEADRMLDEYFAEQMKEII-------------------RQCSPKRQTML 315
F L +V+DEADRMLD F + + +I+ S +RQT++
Sbjct: 395 FVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIM 454
Query: 316 FSATMSEEVKDLAAVSLXE 372
FSAT+ V +LA L E
Sbjct: 455 FSATLPPRVANLAKSYLIE 473
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 108 QESVLRQNPDIVIATPGRLID 170
Q + Q IV+ATPGRL+D
Sbjct: 368 QSFQMSQGAHIVVATPGRLLD 388
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 31.5 bits (68), Expect = 0.17
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +1
Query: 220 VLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLXETRQI 384
V+DEAD++L F +++++ RQ L+SAT VK+ L + +I
Sbjct: 191 VMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDKHLNKPYEI 245
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 209 SRFWCWTKLTGCWMNT 256
SRF+C+TK+ G WM T
Sbjct: 2368 SRFYCYTKMLGEWMFT 2383
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +1
Query: 187 PRFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTML 315
PR G H + + ++ + R +F ++ +I+ P R+T L
Sbjct: 723 PRMGWHDVSMCIIGQPARDAARHFVQRWNYLIQCKKPARKTPL 765
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -2
Query: 342 DFLAHGGREQHGL--TFRGTLTDD 277
DF+ +GGREQH + R LT+D
Sbjct: 82 DFIVYGGREQHLMFPLLRAGLTND 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,208
Number of Sequences: 5004
Number of extensions: 38722
Number of successful extensions: 167
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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