Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_B23
(863 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0359 - 2805094-2805175,2805256-2805347,2805443-2805517,280... 93 3e-19
10_08_0180 + 15502809-15503312,15503399-15503454,15503934-155040... 62 4e-10
03_02_0926 + 12448032-12448231,12448727-12448815,12449956-124500... 45 9e-05
11_06_0281 + 21881382-21881538,21882162-21882394,21882783-218828... 31 1.6
10_01_0268 + 2864524-2864871 30 2.1
08_01_0397 - 3509186-3510291,3510322-3512335 29 3.6
12_01_0668 - 5682664-5682916,5684542-5684576,5684643-5684693,568... 28 8.4
06_03_0029 - 15673494-15673871,15674193-15674375,15674425-156744... 28 8.4
>03_01_0359 -
2805094-2805175,2805256-2805347,2805443-2805517,
2805582-2805675,2805769-2805872,2806777-2806885,
2807397-2807609,2808170-2808289,2809060-2809115,
2809210-2809287,2809374-2809733
Length = 460
Score = 92.7 bits (220), Expect = 3e-19
Identities = 46/103 (44%), Positives = 64/103 (62%)
Frame = +3
Query: 285 DDAINDRLAIWQGDITSLRVDAITNTTDETLTESNEVSDRIMQVAGPDLKEEIILRAHEC 464
D IN ++ +W+G +L VDA+ N+T+E L E++ S + AGP L EE C
Sbjct: 92 DHEINSKICLWRGHPWNLEVDAVVNSTNENLDEAHS-SPGLHAAAGPGLAEECTTLGG-C 149
Query: 465 RTGEVVVTPGFGLQCRHVIHTVCPKYVLKYHTAAESSLHNCYK 593
RTG +T + L R VIHTV PKY +KYHTAAE++L +CY+
Sbjct: 150 RTGMAKMTNAYDLPARKVIHTVGPKYAVKYHTAAENALSHCYR 192
>10_08_0180 +
15502809-15503312,15503399-15503454,15503934-15504053,
15504190-15504260,15504603-15504696,15504772-15504978,
15505406-15505657,15505781-15505889,15506112-15506179,
15506278-15506347,15506429-15506503,15506600-15506691,
15506779-15506860
Length = 599
Score = 62.5 bits (145), Expect = 4e-10
Identities = 34/75 (45%), Positives = 45/75 (60%)
Frame = +3
Query: 369 ETLTESNEVSDRIMQVAGPDLKEEIILRAHECRTGEVVVTPGFGLQCRHVIHTVCPKYVL 548
++L ES+ S + AG L EE CRTG +T + L R VIHTV PKY +
Sbjct: 142 QSLDESHS-SPGLHAAAGSGLAEECSTLGG-CRTGMAKMTNAYDLPARKVIHTVGPKYAV 199
Query: 549 KYHTAAESSLHNCYK 593
KYHTAAE++L +CY+
Sbjct: 200 KYHTAAENALSHCYR 214
>03_02_0926 +
12448032-12448231,12448727-12448815,12449956-12450096,
12450181-12450283,12450386-12450481,12450580-12450654,
12450754-12450823,12451028-12451111
Length = 285
Score = 44.8 bits (101), Expect = 9e-05
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Frame = +3
Query: 297 NDRLAIWQGDITSLRVDAITNTTDETLTESNEVSDRIMQVAGPDLKEEI-----ILRAHE 461
+D L++ +T + + + N +E + V I + AGP+L E +
Sbjct: 110 SDYLSMTMKKMTVIHISQV-NAANERMLGGGGVDGAIHRTAGPELVEACRKVPEVKSGVR 168
Query: 462 CRTGEVVVTPGFGLQCRHVIHTVCPKYVLKYHTAAESSLHNCY 590
C TGE +TP F L VIHTV P Y + E SL+N Y
Sbjct: 169 CPTGEARITPAFKLPVSRVIHTVGPIYDM--DKQPEVSLNNAY 209
>11_06_0281 +
21881382-21881538,21882162-21882394,21882783-21882869,
21882920-21883396
Length = 317
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +2
Query: 368 RDADREQ*SQRPHHASGWSGSERGDHTPGT*VPHRRGGGDARVR 499
+D DR + +RPH RG T G R GGGD RVR
Sbjct: 174 QDPDRRRARRRPHPLDAHPRRRRGHRTAGFPAAPR-GGGDFRVR 216
>10_01_0268 + 2864524-2864871
Length = 115
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 69 K*ITALCVCGSL*SKSLT*NINLENSAKDSSVCGMRAPGDC 191
K + CVC L S + NIN++ + CG+ PG+C
Sbjct: 64 KGVNVPCVCTYLGSPGVRDNINMDKVFYVTKQCGIAIPGNC 104
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 320 RRHNKLESGRNYQHHGRDADREQ*SQRPHH 409
RR + + R+ H RD DRE+ S R HH
Sbjct: 14 RRDKEKDRERSSSRHHRDRDRERSSSRHHH 43
>12_01_0668 -
5682664-5682916,5684542-5684576,5684643-5684693,
5685362-5685505,5685981-5686265,5686369-5686441,
5687123-5687343,5687447-5687524,5687626-5687688,
5688700-5688900
Length = 467
Score = 28.3 bits (60), Expect = 8.4
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +3
Query: 402 RIMQVAGPDLKEEIILRAHECRTGEVVVTPGFGLQCR-HVIHTVCPKYVLKYHTAAESSL 578
R MQVA P ++ +++ A E EVV+ G + ++ + V+ TA L
Sbjct: 236 RRMQVAQPSMQHRVMIEAVENHMPEVVIVDEIGTEAEAQACRSIAERGVMLIGTAHGEHL 295
Query: 579 HNCYK 593
N K
Sbjct: 296 ANIIK 300
>06_03_0029 -
15673494-15673871,15674193-15674375,15674425-15674478,
15674592-15674756,15676478-15676720,15676810-15676896,
15676995-15677225
Length = 446
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 213 QTVAPPPADYSNCTPLHAQPVFLH 284
+T+ P D +C P H QP F H
Sbjct: 74 KTIQSPDGDLIDCVPSHLQPAFDH 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,838,638
Number of Sequences: 37544
Number of extensions: 365488
Number of successful extensions: 1379
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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