Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_B22
         (842 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   261   4e-70
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   258   3e-69
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119...    29   6.1  
09_06_0103 + 20873310-20873382,20873530-20873735                       29   6.1  
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119...    28   8.1  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  261 bits (640), Expect = 4e-70
 Identities = 120/196 (61%), Positives = 150/196 (76%)
 Frame = +2

Query: 137 LGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 316
           LG K     ME YVYKRR+DG ++INL +TWEKL LAAR +VAIENP D+ V S+RP+GQ
Sbjct: 29  LGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQ 88

Query: 317 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 496
           RAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E++  NIP 
Sbjct: 89  RAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPT 148

Query: 497 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLXFY 676
           IA C+TDSP+R+VDI IP N K  +SIG ++WLLAR VL++RG +    +WDV+VDL FY
Sbjct: 149 IAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFY 208

Query: 677 RDPEXSEKDEQQAKEQ 724
           RDPE +++ E++A  Q
Sbjct: 209 RDPEEAKEQEEEAPAQ 224



 Score = 34.7 bits (76), Expect = 0.093
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +1

Query: 52  ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQ 162
           ++A   G    L+  E+DV  MLAA  HLG +N +FQ
Sbjct: 1   MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQ 37


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  258 bits (633), Expect = 3e-69
 Identities = 121/208 (58%), Positives = 153/208 (73%), Gaps = 1/208 (0%)
 Frame = +2

Query: 92  STRKMSPKCLLQPPI-LGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAI 268
           S R+   + +L   + LG K     ME YVYKRR DG ++INL +TWEKL LAAR +VAI
Sbjct: 13  SQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAI 72

Query: 269 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 448
           ENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP 
Sbjct: 73  ENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPR 132

Query: 449 QDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGV 628
            DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR VL++RG 
Sbjct: 133 TDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGT 192

Query: 629 LPRDQRWDVVVDLXFYRDPEXSEKDEQQ 712
           +    +WDV+VDL FYRDPE +++ E++
Sbjct: 193 ILPGHKWDVMVDLFFYRDPEEAKEQEEE 220



 Score = 31.9 bits (69), Expect = 0.66
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 85  LALNEEDVTKMLAATTHLGAENVNFQ 162
           L+  E+D+  MLAA  HLG +N +FQ
Sbjct: 12  LSQREQDIQMMLAADVHLGTKNCDFQ 37


>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
            23812210-23812285,23813064-23813072,23813243-23813335,
            23813578-23813581,23813780-23814703,23814926-23815909,
            23816073-23816118,23816376-23816951,23817253-23817798,
            23817820-23818416
          Length = 2252

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 152  TFSAPRWVVAASILVTSSSLRASTSNP 72
            TF A RWV+AA   V  + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126


>09_06_0103 + 20873310-20873382,20873530-20873735
          Length = 92

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +1

Query: 331 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 438
           +CR+ RC  YC   G    RC +  DPS     ++ +C+
Sbjct: 45  LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83


>08_01_0152 -
           1190358-1190462,1190648-1190765,1191134-1192691,
           1193338-1193530
          Length = 657

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -1

Query: 335 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 180
           + SV + D+  ++  RT  RGS  L    QPE + PRY+       H   VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,416,343
Number of Sequences: 37544
Number of extensions: 557513
Number of successful extensions: 1432
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)