Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_B22
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   2.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.1  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 668 TNQPQHPSAGHGEAHHEASTLH 603
           T  P H + GHG +H  A+  H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHH 432



 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
 Frame = -1

Query: 701 PFHFXQGHGRXT--NQPQHPSAGHGEAHHEAST 609
           P H   GHG       P H  +     HH+ ST
Sbjct: 414 PHHHTMGHGHSHIHATPHHHHSHAATPHHQHST 446


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = +2

Query: 692 SEKDEQQAKEQXXXXXXXXXXXXXHEXWNEXXEPVASW 805
           +++ +QQ ++Q              + W    EP ASW
Sbjct: 437 AQQPQQQQQQQQQQQQQQQQQQQQQQHWPMEEEPAASW 474


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +2

Query: 434 VLDPAQDHQPITEASYVNIPVIALCNTDSP 523
           ++DP ++++   E   + IP++   +   P
Sbjct: 167 IVDPVEENETYDEFDTIRIPIVRSLSKSPP 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,377
Number of Sequences: 438
Number of extensions: 5277
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)