Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_B15
(846 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 33 0.067
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.47
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 29 0.63
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 29 0.63
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 29 1.1
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 1.1
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 28 1.4
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.5
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.3
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.4
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 26 7.7
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 7.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 7.7
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 7.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 7.7
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 32.7 bits (71), Expect = 0.067
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Frame = +1
Query: 481 HPFILSHYYWRSRPYASSHPPLAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFA 660
HPF+ ++ P+A+ P L + P +P + + S+NP TP +
Sbjct: 233 HPFMQES---KTSPFATRRPSL----NTDHHGRPILLSPL--NYQNSSLNPSTPSPFGGS 283
Query: 661 PGLKPPLSSEAPSAYLTP-SXTGHG*RGFAPLFQVNDESQ--ASRLXIXXXAXSVPSSNH 831
P + PP+S+ +P P S GH AP F +E+ + R I S PS+++
Sbjct: 284 PVMHPPVSNLSPRTPAVPMSSDGH----LAPAFDFLNENPIWSKRFSISSIKYSAPSTSN 339
Query: 832 PS 837
S
Sbjct: 340 AS 341
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.9 bits (64), Expect = 0.47
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +1
Query: 523 YASSHPPLAISATSTRSSNPRFHTPTTPDLTSIS 624
Y SS IS +ST N FH PT TS S
Sbjct: 795 YLSSSSSRTISTSSTNEYNTSFHAPTVSSTTSSS 828
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 29.5 bits (63), Expect = 0.63
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 529 SSHPPLAISATSTRSSNPRFHTPTTPDLTSISINPLTP-Y*KEFAPGLKPPLSSEAPSAY 705
+S PP ++S+ FHTPT P T +S +P + + PLS +A S
Sbjct: 120 NSSPPNSLSSQPKHQEFHLFHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAASLT 179
Query: 706 LTP 714
+P
Sbjct: 180 SSP 182
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 29.5 bits (63), Expect = 0.63
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Frame = +1
Query: 553 SATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSA-YLTPSXTGH 729
SA + +S+P + +L S++I+P++ + A P SS A LTPS T
Sbjct: 494 SANISVTSSPIRPSKNENNLPSLAISPVSEGFIQNATISTPSTSSNLSIAGSLTPSKTSR 553
Query: 730 G*RGFAPL----FQVNDESQASRL-XIXXXAXSVPSSN 828
RG APL F + +A L + + SVPS N
Sbjct: 554 IYRGLAPLKNPEFNEDHVKKAEHLEPLLNVSSSVPSKN 591
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 534 PPSPGDLGYINPIIKSPIPYTNHPRLNIHFHQSPD 638
PP PGD+ + NP++ P + P +F +P+
Sbjct: 218 PPQPGDIVFSNPMLGGPDHKVSQPSETENFLPTPE 252
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 1.1
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +2
Query: 278 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 448
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 449 DVTVEGVNVLATPSSS 496
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 4 WDDLFMEEIVPLXVSAASAIPSLVNAFSSSKPPQTD 111
W D+F + +P+ ++A IPSL A SK P T+
Sbjct: 239 WFDIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 525 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 406
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 260 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 373
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.4
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2
Query: 341 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 430
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 547 AISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPS 717
A+ ++ S F PTT S+SI+P K A +P + ++ S TP+
Sbjct: 69 AVETNASASHETSFALPTTSPAASLSISPT----KSAAVSSEPNVEADVKSLSSTPA 121
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 510 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 376
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 7.7
Identities = 19/61 (31%), Positives = 24/61 (39%)
Frame = +1
Query: 520 PYASSHPPLAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPS 699
P +S PP+ A SS P P P + S L P + PP S+AP
Sbjct: 152 PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPV 211
Query: 700 A 702
A
Sbjct: 212 A 212
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +3
Query: 588 PYTNHPRLNIH---FHQSPDAVLEGVRAGVKASVVIRGSISVSHPLXHW 725
P T+ ++H F S A+ ++ + S+SVS+PL HW
Sbjct: 117 PLTSGMNKSVHEYPFTLSESAISSSHKSSIPERRNFDSSVSVSNPLLHW 165
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 7.7
Identities = 17/70 (24%), Positives = 26/70 (37%)
Frame = +2
Query: 278 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 457
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 458 VEGVNVLATP 487
V +TP
Sbjct: 540 YTSTPVTSTP 549
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,095,788
Number of Sequences: 5004
Number of extensions: 61021
Number of successful extensions: 256
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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