Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_B10
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.37 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.5  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    27   3.5  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   6.0  
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    26   6.0  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   8.0  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   8.0  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 223 VRVHRANTGRSSNELDRQTTELERR 297
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 146 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 48
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = -3

Query: 173 WSXGGESRSYVARSESIMRDSDVAFSHSAALAIAQVRRNGNKNNISRRHFMTTDLF 6
           WS G     +   +ESI+   +       +L ++  R +   +N S  H + T +F
Sbjct: 242 WSHGLTPEVFWQNTESILTCPEEQLEQKISLLLSSTRNSPTMSNSSLTHLLPTPIF 297


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 439 IKRLDISTPISMQLDNWPNDMQTCXFKFGSRMHN 540
           +KR DI    +   DNW ND+  C  + G  +H+
Sbjct: 600 VKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630


>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 378 PPPGTTLSAARVSNNGSVSWD 440
           PPP   + AAR SNNG+   D
Sbjct: 157 PPPYPNVEAARASNNGAAPPD 177


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = -3

Query: 209 HVSNAGSG*LRFWSXGGESRSYVARSESIMR----DSDVAFSHSAALAIAQVRRNGNKNN 42
           H+S    G  R ++ GG   SY A+   + R    D+ V ++ SAAL +  + R  + ++
Sbjct: 433 HLSGMTMGMRRMFTQGG---SYSAQERGLCRLEQKDTVVRYAQSAALYLIFLLRRPSADS 489

Query: 41  ISRRH 27
             RRH
Sbjct: 490 GIRRH 494


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = -3

Query: 209 HVSNAGSG*LRFWSXGGESRSYVARSESIMR----DSDVAFSHSAALAIAQVRRNGNKNN 42
           H+S    G  R ++ GG   SY A+   + R    D+ V ++ SAAL +  + R  + ++
Sbjct: 433 HLSGMTMGMRRMFTQGG---SYSAQERGLCRLEQKDTVVRYAQSAALYLIFLLRRPSADS 489

Query: 41  ISRRH 27
             RRH
Sbjct: 490 GIRRH 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,216
Number of Sequences: 5004
Number of extensions: 50851
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)