Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_B10
(868 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0271 - 2881059-2881409 32 0.52
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 31 1.2
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351... 31 1.6
06_03_0002 - 15280292-15281550,15282714-15282840 29 4.8
03_02_0488 - 8824980-8825267,8825364-8827775 29 4.8
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 6.4
04_01_0065 - 636957-637082,637165-637251,637365-637625,637695-63... 29 6.4
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 8.4
06_02_0175 - 12624608-12625297 28 8.4
06_01_0194 + 1503350-1503554,1504399-1504490,1504835-1504935,150... 28 8.4
05_01_0017 - 124056-124541 28 8.4
04_04_0534 + 26071227-26071811 28 8.4
>10_01_0271 - 2881059-2881409
Length = 116
Score = 32.3 bits (70), Expect = 0.52
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = -3
Query: 539 LCILEPNLNXQ--VCMSLGQLSNCIEIGVLMSKRFIPGDGAVIRYTGGGERSPRRWLQPR 366
LC EP Q C S + IE G + G + +GGG SPRRWL
Sbjct: 29 LCHAEPQELHQHHACASWTTKTTVIETGPPDLAVAVLGTARCLAISGGGG-SPRRWLPSA 87
Query: 365 LAVPRQASTSV 333
PR +S +V
Sbjct: 88 TTAPRVSSVTV 98
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -1
Query: 325 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVRGGS 155
H P AAA P VP++ P L + S GG GL S S + G + D G+ GGS
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGI-GGS 62
>10_08_0267 -
16333239-16333820,16333904-16334842,16334920-16335172,
16336837-16337063,16338189-16339388
Length = 1066
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = -3
Query: 473 IEIGVLMSKRFIP-GDGAVIRYTGGGERSPRRWLQPRLAVPRQASTSVPRTP-AKCCSPT 300
I+ GV F P D V+R+ R RRWL PR ST R + C+ +
Sbjct: 257 IDFGVPFPSHFHPTSDADVLRWQDRMRRRGRRWLWAFAGAPRPGSTKTVRAQIIEQCTAS 316
Query: 299 P 297
P
Sbjct: 317 P 317
>06_03_0002 - 15280292-15281550,15282714-15282840
Length = 461
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +1
Query: 358 TAKRGCNHRRGLRSPPPVYLITAPSPGIKRLDISTP 465
T RG N R LRSP P L+ P I D P
Sbjct: 59 TVSRGRNPHRSLRSPNPRLLMVQEEPNITTPDAGHP 94
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = -3
Query: 404 GGERSP-RRWLQPRLAVPRQASTSVPRTPA---KCCSPTPLRSNSVVCRSNSFEDL 249
G RSP RR L P L PRQ+STS P P+ KC P + S+ ++ +++
Sbjct: 458 GSRRSPLRRMLDPILK-PRQSSTSGPIQPSFVPKCHLPGHIDKQSLSLGGSALQNV 512
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 223 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 339
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>04_01_0065 -
636957-637082,637165-637251,637365-637625,637695-638100,
640036-640223
Length = 355
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = -1
Query: 277 FVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVRGGSPDRTLRGASRS*GTVMLRF 98
++ +H C+ G G+ N+S+ + D + G SPD L G + ++ R
Sbjct: 6 YLQSLHFN-CIRLPDGAGVVNMSLPIVLAIGDREKEEIGSSPDVALHGPDGAVLAILRRV 64
Query: 97 RILPH 83
I PH
Sbjct: 65 EIYPH 69
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 229 VHRANTGRSSNELDRQTTELERRGVG 306
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>06_02_0175 - 12624608-12625297
Length = 229
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -3
Query: 779 GEGXGAGGXXGXAGXRPAXGXGRGRVSRXKXGEQ 678
G G G GG G G R G G GR R K G++
Sbjct: 113 GGGGGGGGGGGGGGRRCWWGCGNGR-RRHKGGKE 145
>06_01_0194 +
1503350-1503554,1504399-1504490,1504835-1504935,
1506186-1506276,1506616-1506674,1506764-1506884,
1506959-1507027,1507321-1507373,1507688-1507796,
1507895-1508065,1508148-1508306,1508561-1508650,
1508751-1508933,1509837-1510027,1510340-1510787
Length = 713
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = -3
Query: 854 GGFRGXXKGXXXXXXXXXXXLAXPXGEGXGAGGXXGXAGXRPAXGXGRGR 705
GG RG +G G G G GG G G G GRGR
Sbjct: 664 GGSRGRGRGRGGGGGRGRGG-GGGGGRGGGGGGGGGRGGRGRGRGRGRGR 712
>05_01_0017 - 124056-124541
Length = 161
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 779 GEGXGAGGXXGXAGXRPAXGXGRG 708
G G G GG G G P G G+G
Sbjct: 89 GRGRGVGGVPGAVGATPLGGVGKG 112
>04_04_0534 + 26071227-26071811
Length = 194
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 345 GLTWYC*TRLQPPPGTTLSAARVSNNGSVSWD 440
G W+C TR +P P +L A N SWD
Sbjct: 166 GRAWFCSTRARPDPLPSLDTA----NAGTSWD 193
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,943,335
Number of Sequences: 37544
Number of extensions: 490675
Number of successful extensions: 1902
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1887
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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