Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_B10
(868 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 44 2e-06
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 44 2e-06
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 44 2e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 44 2e-06
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 44 2e-06
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 44 2e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 44 2e-06
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 44 2e-06
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 41 2e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 40 2e-05
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 40 2e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 40 2e-05
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 40 3e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 40 3e-05
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 40 4e-05
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 40 4e-05
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 40 4e-05
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 39 5e-05
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 34 0.002
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 34 0.002
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 31 0.018
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 29 0.073
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 25 0.68
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 23 4.8
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 23 4.8
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 4.8
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 44.0 bits (99), Expect = 2e-06
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +2
Query: 125 STRSSQRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW 304
S + +R + ++ +TL + ++ E + A L++ W+D L WN E+
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 305 -GCSTWLVSSERLWRPDVVLLNAA 373
G ++ +LW+PD+++ N+A
Sbjct: 124 GGVKDLRITPNKLWKPDILMYNSA 147
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 44.0 bits (99), Expect = 2e-06
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +2
Query: 125 STRSSQRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW 304
S + +R + ++ +TL + ++ E + A L++ W+D L WN E+
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 305 -GCSTWLVSSERLWRPDVVLLNAA 373
G ++ +LW+PD+++ N+A
Sbjct: 124 GGVKDLRITPNKLWKPDILMYNSA 147
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 43.6 bits (98), Expect = 2e-06
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 140 QRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCST 316
+R + ++ +TL + ++ E + A L++ W+D L WN E+ G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
Query: 317 WLVSSERLWRPDVVLLNAA 373
++ +LW+PD+++ N+A
Sbjct: 61 LRITPNKLWKPDILMYNSA 79
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 43.6 bits (98), Expect = 2e-06
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 140 QRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCST 316
+R + ++ +TL + ++ E + A L++ W+D L WN E+ G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
Query: 317 WLVSSERLWRPDVVLLNAA 373
++ +LW+PD+++ N+A
Sbjct: 61 LRITPNKLWKPDILMYNSA 79
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 43.6 bits (98), Expect = 2e-06
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 140 QRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCST 316
+R + ++ +TL + ++ E + A L++ W+D L WN E+ G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
Query: 317 WLVSSERLWRPDVVLLNAA 373
++ +LW+PD+++ N+A
Sbjct: 61 LRITPNKLWKPDILMYNSA 79
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 43.6 bits (98), Expect = 2e-06
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 140 QRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCST 316
+R + ++ +TL + ++ E + A L++ W+D L WN E+ G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
Query: 317 WLVSSERLWRPDVVLLNAA 373
++ +LW+PD+++ N+A
Sbjct: 61 LRITPNKLWKPDILMYNSA 79
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 43.6 bits (98), Expect = 2e-06
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 140 QRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCST 316
+R + ++ +TL + ++ E + A L++ W+D L WN E+ G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
Query: 317 WLVSSERLWRPDVVLLNAA 373
++ +LW+PD+++ N+A
Sbjct: 61 LRITPNKLWKPDILMYNSA 79
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 43.6 bits (98), Expect = 2e-06
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 140 QRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCST 316
+R + ++ +TL + ++ E + A L++ W+D L WN E+ G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
Query: 317 WLVSSERLWRPDVVLLNAA 373
++ +LW+PD+++ N+A
Sbjct: 61 LRITPNKLWKPDILMYNSA 79
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 40.7 bits (91), Expect = 2e-05
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +2
Query: 176 IVVNLTLHLRHA---NIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLW 343
+VV L L L N+++ T + L+ W D + W+ E+G T L V SE +W
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 344 RPDVVLLNAA 373
PD+VL N A
Sbjct: 104 LPDIVLYNNA 113
Score = 24.2 bits (50), Expect = 1.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 487 WPNDMQTCXFKFGS 528
+P D QTC KFGS
Sbjct: 152 FPFDQQTCFMKFGS 165
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 40.3 bits (90), Expect = 2e-05
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 373
++ +W D +L W+ E+G L V S+ +WRPD+VL N A
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNA 117
Score = 24.2 bits (50), Expect = 1.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 472 MQLDNWPNDMQTCXFKFGS 528
+ ++ +P D QTC KFGS
Sbjct: 151 IDVEYFPFDEQTCVMKFGS 169
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 40.3 bits (90), Expect = 2e-05
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +2
Query: 143 RTIGTPPPXSKIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWG-CST 316
R +G + + L L L N++ T + ++ W D +L WN ++G T
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWNPDDYGGVDT 94
Query: 317 WLVSSERLWRPDVVLLNAA 373
V SE +W PD+VL N A
Sbjct: 95 LHVPSEHIWLPDIVLYNNA 113
Score = 24.2 bits (50), Expect = 1.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 472 MQLDNWPNDMQTCXFKFGS 528
+ ++ +P D QTC KFGS
Sbjct: 147 IDVEYFPFDEQTCFMKFGS 165
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 40.3 bits (90), Expect = 2e-05
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 176 IVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 352
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 353 VVLLNAA 373
+L N A
Sbjct: 92 TILYNNA 98
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.9 bits (89), Expect = 3e-05
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +2
Query: 173 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 346
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 347 PDVVLLNAA 373
PD+VL N A
Sbjct: 113 PDIVLYNNA 121
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 469 SMQLDNWPNDMQTCXFKFGS 528
S+ ++ +P D+QTC K GS
Sbjct: 154 SIDVEFFPYDVQTCVLKLGS 173
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.9 bits (89), Expect = 3e-05
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +2
Query: 173 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 346
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 347 PDVVLLNAA 373
PD+VL N A
Sbjct: 113 PDIVLYNNA 121
Score = 24.2 bits (50), Expect = 1.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 472 MQLDNWPNDMQTCXFKFGS 528
+ ++ +P D QTC KFGS
Sbjct: 155 IDVEYFPFDEQTCVLKFGS 173
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 39.5 bits (88), Expect = 4e-05
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +2
Query: 173 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWR 346
K+ VN L ++ N+ E ++ L+ W D +L W+ ++ G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 347 PDVVLLNAA 373
PD+VL N A
Sbjct: 111 PDIVLFNNA 119
Score = 24.6 bits (51), Expect = 1.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 487 WPNDMQTCXFKFGSRMHN 540
+P D QTC KFGS N
Sbjct: 158 FPFDQQTCIMKFGSWTFN 175
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 39.5 bits (88), Expect = 4e-05
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +2
Query: 140 QRTIGTPPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTW 319
+R +G + LTL ++ ++ E + L++ W D + WN ++G
Sbjct: 39 ERPVGNESEPLVLSFGLTL-MQIIDVDEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRD 97
Query: 320 L-VSSERLWRPDVVLLNAA 373
L + RLW+PDV++ N+A
Sbjct: 98 LRIPPHRLWKPDVLMYNSA 116
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 39.5 bits (88), Expect = 4e-05
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 254 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 373
++ W D +L WN E+G L V SE +W PD+VL N A
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126
Score = 24.2 bits (50), Expect = 1.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 472 MQLDNWPNDMQTCXFKFGSRMHN 540
+ ++ +P D Q+C KFGS +N
Sbjct: 160 INVEYFPFDEQSCIMKFGSWTYN 182
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 39.1 bits (87), Expect = 5e-05
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +2
Query: 158 PPPXSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSE 334
P + ++ L ++H N+ E TV L++ W L+W + E+ ++ V S
Sbjct: 54 PEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSY 113
Query: 335 RLWRPDVVL 361
+W PD+V+
Sbjct: 114 EIWVPDIVM 122
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 33.9 bits (74), Expect = 0.002
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 215 IRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 367
I E + T + + +W+D+RL++ G+ + + R+W+PD N
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
Score = 30.3 bits (65), Expect = 0.024
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 445 RLDISTPISMQLDNWPNDMQTCXFKFGS 528
RL I M L+N+P D Q C +FGS
Sbjct: 123 RLTIKAGCPMNLENFPMDTQRCPLQFGS 150
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 33.9 bits (74), Expect = 0.002
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = +2
Query: 158 PPPXSKIVVNLTLHL--RHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVS 328
P +I N+T+ L + + S + + + + + W D LSW ++ G + V
Sbjct: 61 PISSHQIANNVTMQLLPKLMEFDDWTSVMELHSWMTLMWTDSHLSWKPSDFDGINYIYVK 120
Query: 329 SERLWRPDVVLLNAAATT 382
S+ +W PD+ + N+ T
Sbjct: 121 SDDIWVPDISVYNSGDMT 138
Score = 25.0 bits (52), Expect = 0.90
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +1
Query: 484 NWPNDMQTCXFKFGSRMHN 540
+WP D C FGS +H+
Sbjct: 175 SWPYDTHRCRINFGSWVHS 193
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 30.7 bits (66), Expect = 0.018
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +2
Query: 179 VVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKRLSWN--AGEWGCSTWLVSSERLWRP 349
+V + L +R A I + + +Q + W+D+RL +N G T L + R+W P
Sbjct: 60 IVRVNLFVRSIATISDIKMEYSVQLTFREQWLDERLRFNDFGGRLKYLT-LTDASRVWMP 118
Query: 350 DVVLLN 367
D+ N
Sbjct: 119 DLFFSN 124
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 28.7 bits (61), Expect = 0.073
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +2
Query: 215 IRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 367
+ E + + + +W D RLS+ S + ER+WRPD N
Sbjct: 76 VSELDMDYSMDCYFRQSWRDSRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
Score = 26.6 bits (56), Expect = 0.30
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 445 RLDISTPISMQLDNWPNDMQTCXFKFGS 528
RL I M+L N+P D Q+C GS
Sbjct: 155 RLTIKAKCPMELRNFPMDRQSCPLILGS 182
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 25.4 bits (53), Expect = 0.68
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 445 RLDISTPISMQLDNWPNDMQTCXFKFGSRMHN 540
RL + ++L+ +P D+Q C F S HN
Sbjct: 135 RLQATLNCGLRLEKFPFDVQECPLIFESWTHN 166
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 22.6 bits (46), Expect = 4.8
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Frame = +2
Query: 176 IVVNLTLHLRHAN-IRESESTVRIQADLQMNWIDKRLS-----WNAGEWGCSTWLVSSER 337
++V+ + + N I + R+ ++ +WI+ RL + G+ + +
Sbjct: 11 VLVDFNIFVADINSINVEDMDFRVDMFVRQSWIESRLDMPDYIFEEGDDYVTLPPEFFDS 70
Query: 338 LWRPDVVLLNA 370
LW+PD LNA
Sbjct: 71 LWQPDPYFLNA 81
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 22.6 bits (46), Expect = 4.8
Identities = 8/33 (24%), Positives = 17/33 (51%)
Frame = +1
Query: 439 IKRLDISTPISMQLDNWPNDMQTCXFKFGSRMH 537
+ +L + +M+ +++P+D Q C S H
Sbjct: 123 MSKLTLVLSCAMKFESYPHDTQICSMMIESLSH 155
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.6 bits (46), Expect = 4.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 319 PSAAAPLPCVPTQS 278
PSA AP+P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,604
Number of Sequences: 438
Number of extensions: 4076
Number of successful extensions: 69
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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