Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_B09
         (851 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0640 + 35230664-35231065,35231957-35232202                       29   3.6  
01_06_0922 - 33022709-33023545                                         29   3.6  
01_06_0362 + 28739969-28740232,28740336-28740452,28740560-287406...    29   6.2  

>03_06_0640 + 35230664-35231065,35231957-35232202
          Length = 215

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +1

Query: 637 YSFRTRSDRVSFRSTHSDGIIKLITHALKIPKKNFLIRVRPDA 765
           YS R R+ R    ST+ DGI  L+T+  K P+    +++R +A
Sbjct: 156 YSIRKRNSRTGLPSTYYDGIYLLVTYFTK-PESLDALQMRLNA 197


>01_06_0922 - 33022709-33023545
          Length = 278

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 553 SRDVKRSRTVPTENERTKRTFRQHLN-ARKRTPERKR*ISP 434
           SR  + S + P   E+  R+ R+  + A KRTPE++R  SP
Sbjct: 159 SRSARASASPPPRREQRDRSVRRSPSPAAKRTPEQRRAASP 199


>01_06_0362 +
           28739969-28740232,28740336-28740452,28740560-28740660,
           28741251-28741322,28741433-28741514,28741607-28741687,
           28742548-28742589,28743009-28743047,28743278-28743343,
           28743444-28743590,28743638-28743652
          Length = 341

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 48  SLVAASEQEYSPALNPVVLIDNGRCGVREVPL 143
           S V  +E+ Y+P+++PV+L D  R G + V L
Sbjct: 185 SFVDKTEKRYNPSMSPVILKDKWRKGSQWVAL 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,795,784
Number of Sequences: 37544
Number of extensions: 437587
Number of successful extensions: 1203
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)