Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_B08
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.64 
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    28   2.0  
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    27   2.6  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    27   3.4  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.4  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   7.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 426 PPRVEPPRSNYTFAGAPFPPRAKVATPP 343
           PP   PPRSN      P PP+ + A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 561 AYRPWLFRPVLAQDSRKGTDGAVPPL 638
           A+ PW +R  LAQ  +   +  +PP+
Sbjct: 425 AFEPWYYRKCLAQGGKPDPEARLPPM 450


>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
 Frame = +2

Query: 218 SAARDRGQGRSEDTAPSPSRRRACSPGRHPGTWR-RRRSLPITGGVATFALGGKGAPAKV 394
           S    +  G+  D  P PS  R C    H G+ +   +   +TGG +     G G  A V
Sbjct: 6   STQTQKWPGKHADLDPEPSLLRYCDGRVHVGSGKLAEKKTLLTGGDS-----GIGKAAAV 60

Query: 395 *FERGGSTLGGPC 433
            F R GS L   C
Sbjct: 61  MFAREGSDLVISC 73


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 620 VGSLPAILCKYRPKQPWPVSICVSRKVRHPRSRP 519
           + S P  L K+R + P    IC  RKV+  R +P
Sbjct: 1   MSSSPPALKKFRKRSPKSCLICRRRKVKCDRQQP 34


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
 Frame = -3

Query: 411 PPRSNYTFAGAPFP-------PRAKVATPPVIGSERLRLQVPGWRPGEQARRLEGDGAVS 253
           PP SNY  A  P+        P++  A PP   S R R+  P + PG    +    G   
Sbjct: 98  PPSSNYNTAKPPYQTSQFYARPQSSYAPPP---SGRPRISYP-YPPGYMCYKCHNTGYKD 153

Query: 252 SDRP 241
           S RP
Sbjct: 154 SGRP 157


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
 Frame = -3

Query: 549 PEGEASAVAAH--PVRENRADRLDGSEAGR---RVRQAARPRLQHGP--PRVEPPRSNYT 391
           P   AS + ++  PV E      + + +G    R RQ  R R    P  PRV  P   Y 
Sbjct: 211 PASAASEIISNKDPVVEPTHSASNAANSGSNTIRARQTTRTRSNTLPWSPRVFGPTLGYN 270

Query: 390 FAGAPFPPRAKVATPPVIGS 331
                +PP    A P   GS
Sbjct: 271 TPPFGYPPTTSSALPNASGS 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,000
Number of Sequences: 5004
Number of extensions: 44260
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)