Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_B08
(863 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical ... 30 1.9
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 30 2.4
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 5.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 5.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 5.7
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 29 5.7
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 29 5.7
AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical... 29 5.7
AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical ... 29 5.7
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 29 5.7
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 29 5.7
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 28 7.5
L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembl... 28 9.9
AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein... 28 9.9
>AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical
protein Y44E3A.4 protein.
Length = 511
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -3
Query: 483 GSEAGRRVRQAARPRLQHGPPRVEPPRSNYTFAGAPFPPRAKVATPP 343
G+ G RQA + H PP V PP+ A P P + VA PP
Sbjct: 259 GARHGSISRQATLTFVSHKPPPVNPPQP----AVPPKPAKISVADPP 301
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 203 RGAATSAARDRGQGRSEDTAPSPSRRRACSPGRHPGTWRRR 325
RG + S +RDRG+ RS D + SR R+ R R R
Sbjct: 105 RGRSRSRSRDRGRDRSRDRSRDRSRDRSRDRSRERSRERER 145
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -3
Query: 444 PRLQHGPPRVEPPRSNYTFAGAPFPPRAKVATPPVIGSERLRLQVPGWRP 295
P + GPP PP G P PP PP+ G PG P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -3
Query: 444 PRLQHGPPRVEPPRSNYTFAGAPFPPRAKVATPPVIGSERLRLQVPGWRP 295
P + GPP PP G P PP PP+ G PG P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -3
Query: 444 PRLQHGPPRVEPPRSNYTFAGAPFPPRAKVATPPVIGSERLRLQVPGWRP 295
P + GPP PP G P PP PP+ G PG P
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 352
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = +2
Query: 218 SAARDRGQGRSEDTAPSPSRRRACSPGRHPGTWRRRR 328
S +RDR GRS SPSRRR R + RRRR
Sbjct: 35 SRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 69
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = +2
Query: 218 SAARDRGQGRSEDTAPSPSRRRACSPGRHPGTWRRRR 328
S +RDR GRS SPSRRR R + RRRR
Sbjct: 63 SRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 97
>AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical
protein T08B2.5d protein.
Length = 163
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = +2
Query: 218 SAARDRGQGRSEDTAPSPSRRRACSPGRHPGTWRRRR 328
S +RDR GRS SPSRRR R + RRRR
Sbjct: 121 SRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 155
>AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical
protein T08B2.5e protein.
Length = 184
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = +2
Query: 218 SAARDRGQGRSEDTAPSPSRRRACSPGRHPGTWRRRR 328
S +RDR GRS SPSRRR R + RRRR
Sbjct: 142 SRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 176
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = +2
Query: 218 SAARDRGQGRSEDTAPSPSRRRACSPGRHPGTWRRRR 328
S +RDR GRS SPSRRR R + RRRR
Sbjct: 121 SRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 155
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = +2
Query: 218 SAARDRGQGRSEDTAPSPSRRRACSPGRHPGTWRRRR 328
S +RDR GRS SPSRRR R + RRRR
Sbjct: 122 SRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 156
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 245 RSEDTAPSPSRRRACSPGRHPGTWRRRRS 331
RS + SP+ RR SP + P RRRRS
Sbjct: 441 RSPSQSKSPAPRRRRSPSKSPQAPRRRRS 469
>Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical
protein F25H8.5c protein.
Length = 732
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = -3
Query: 510 RENRADRLDGSEAGRRVRQAARPRLQHGPPRVEPPRSNYTFAGAPFPPRAKVATP 346
R+ A+ +EA R R+ R R P PPR+N P PP + P
Sbjct: 63 RQQSAEERARAEADARRRERCRNRRPQPTPGPPPPRNNCLPPPGPPPPCQQYQQP 117
>Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical
protein F25H8.5b protein.
Length = 369
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = -3
Query: 510 RENRADRLDGSEAGRRVRQAARPRLQHGPPRVEPPRSNYTFAGAPFPPRAKVATP 346
R+ A+ +EA R R+ R R P PPR+N P PP + P
Sbjct: 63 RQQSAEERARAEADARRRERCRNRRPQPTPGPPPPRNNCLPPPGPPPPCQQYQQP 117
>Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical
protein F25H8.5a protein.
Length = 780
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = -3
Query: 510 RENRADRLDGSEAGRRVRQAARPRLQHGPPRVEPPRSNYTFAGAPFPPRAKVATP 346
R+ A+ +EA R R+ R R P PPR+N P PP + P
Sbjct: 63 RQQSAEERARAEADARRRERCRNRRPQPTPGPPPPRNNCLPPPGPPPPCQQYQQP 117
>L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembly
abnormal protein 4 protein.
Length = 808
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -3
Query: 459 RQAARPRLQ--HGPPRVEPPRSNYTFAGAPFPPRAKVATPPVIGSERLRL 316
++ +RP L+ G R PR+N T AGAP A+ P I R L
Sbjct: 13 QKPSRPFLRKGQGTARFRMPRNNKTSAGAPPTSELSSASSPSINVPRFSL 62
>AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein
protein.
Length = 808
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -3
Query: 459 RQAARPRLQ--HGPPRVEPPRSNYTFAGAPFPPRAKVATPPVIGSERLRL 316
++ +RP L+ G R PR+N T AGAP A+ P I R L
Sbjct: 13 QKPSRPFLRKGQGTARFRMPRNNKTSAGAPPTSELSSASSPSINVPRFSL 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,018,685
Number of Sequences: 27780
Number of extensions: 288670
Number of successful extensions: 968
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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