Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_B05
(844 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 33 0.38
02_04_0221 - 21021886-21022144,21022227-21022345,21022681-210229... 32 0.50
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.5
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.0
09_01_0180 + 2632507-2634870 30 2.0
01_06_0258 + 27950196-27950749,27953670-27954570 30 2.0
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.5
04_04_0158 - 23187070-23187264,23187347-23187477,23187550-231877... 29 4.6
04_04_0921 - 29431812-29432786 28 8.1
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.1
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.7 bits (71), Expect = 0.38
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 309 HQPSAAAPFPCVPTQSFVDPIRLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 145
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>02_04_0221 -
21021886-21022144,21022227-21022345,21022681-21022920,
21023064-21023171,21023272-21023331,21023991-21024066,
21024155-21024360,21024722-21024784,21024925-21025012,
21025515-21026015,21027206-21027603
Length = 705
Score = 32.3 bits (70), Expect = 0.50
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +3
Query: 618 PXPWRGGSSRGXVPDVFPGDAPRAHXLAAGXRVXRGAPXFCSXPXALPP 764
P P R G+ VP PG + H L V + AP + P A PP
Sbjct: 55 PTPTRWGAGASAVPPRCPGPQDQHHGLPLPRPVSKSAPMPLASPAAAPP 103
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 362 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 514
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 207 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 323
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>09_01_0180 + 2632507-2634870
Length = 787
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -1
Query: 703 AASXCARGASPGKTSGTXPRELPPRHGXGXAPHWTDPSHPTLLTRTY 563
+AS A +SP T P + P G APH DP+ LL R +
Sbjct: 16 SASAAATKSSPAATEPKAPTQSQPPAANGAAPHLVDPA--VLLRRAH 60
>01_06_0258 + 27950196-27950749,27953670-27954570
Length = 484
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 699 PAXVPGARLXERHLEHXHASFHLATVLAXHRTGQIRHIPRS 577
PA PGAR L+H F+ TV G++ IPR+
Sbjct: 306 PAGAPGARQTPLVLDHRTRPFYAVTVKGVSVAGELLKIPRA 346
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 222 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 133
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>04_04_0158 -
23187070-23187264,23187347-23187477,23187550-23187763,
23187834-23187932,23188034-23188156,23188247-23188366,
23188447-23188506,23188592-23188884,23189554-23189707,
23189813-23190130,23190668-23190798,23191001-23191586,
23192125-23192739
Length = 1012
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = -1
Query: 724 PRXTRXPAASXCARGASPGKTSGTXPRELPPRHGXGXA--PHW 602
P PAA GASPG+ P +L PRH G P W
Sbjct: 64 PEAAPGPAAPEAGAGASPGEIFVPTPAQL-PRHRVGSTLDPSW 105
>04_04_0921 - 29431812-29432786
Length = 324
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 206 SPSPPCGYWQIFKRIGSTND*VGTQGNGAAALGWCPRNACGGLTW 340
+P P CG + ++R GS + G+ G GA W + G W
Sbjct: 114 APGPFCGGGRRWRRCGSWSAVRGSGGRGARWAAWAGLCSSGRCAW 158
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 391 GRGERSPRRWLQPRLAVPRQASTSVPRTP 305
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,740,078
Number of Sequences: 37544
Number of extensions: 555648
Number of successful extensions: 1704
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1702
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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