Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_B03
         (845 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              34   0.001
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    32   0.008
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    32   0.008
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              29   0.041
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            27   0.22 

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 34.3 bits (75), Expect = 0.001
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 378 LTCEAAGSPAPSVHWFKNDSPVYEYDVESNELIGSSPTSIAR 503
           + C  AG P P V W KND  +     +  +LIG+    I +
Sbjct: 421 IRCHVAGEPLPRVQWLKNDEALNHDQPDKYDLIGNGTKLIIK 462



 Score = 26.2 bits (55), Expect = 0.38
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +2

Query: 698 IGXGXVLPCRVKGHPKPXITW-FNGXNVPIEKNPXXKVLXSG 820
           +G    + C V G P P + W  NG ++     P  +V   G
Sbjct: 324 VGDNVEIKCDVTGTPPPPLVWRRNGADLETLNEPEIRVFNDG 365


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 31.9 bits (69), Expect = 0.008
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 360 PGTTIELTCEAAGSPAPSVHW 422
           PG  + L C AAG+P P V W
Sbjct: 435 PGPAVSLKCSAAGNPTPQVTW 455



 Score = 26.2 bits (55), Expect = 0.38
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +2

Query: 659 PRIVVSYSTYVDNIGXGXVLPCRVKGHPKPXITW-FNGXNVP 781
           P ++ S+       G    L C   G+P P +TW  +G  +P
Sbjct: 422 PMLLYSFIEQTLQPGPAVSLKCSAAGNPTPQVTWALDGFALP 463



 Score = 25.8 bits (54), Expect = 0.50
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +3

Query: 339 LPSYAHTPGTTIELTCEAAGSPAPSVHW 422
           +P      G T+ L C  AG P   + W
Sbjct: 525 IPKVTAVAGETLRLKCPVAGYPIEEIKW 552



 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 372 IELTCEAAGSPAPSVHWFK 428
           + L C+A G P P++ W K
Sbjct: 727 VALHCQAQGVPTPTIVWKK 745



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +2

Query: 701 GXGXVLPCRVKGHPKPXITWFNGXNVPIEKNP 796
           G    L C V G     +TW  G    IE NP
Sbjct: 822 GDTATLHCEVHGDTPVTVTWLKGGK--IELNP 851



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
 Frame = +3

Query: 297 SDGSHKYLSITQGPLPSYAHTPGTTIE--------LTCEAAGSPAPSVHWFKND 434
           S G H + +  +GP  S+   P + +E        L C A GSP  ++ W   D
Sbjct: 17  SAGGHGFDAHLRGP--SFVMEPPSRVEFSNSSGAWLDCTATGSPPLNIDWSTAD 68



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +2

Query: 647 VPLKPRIVVSYSTYVDNIGXGXVLPCRVKGHPKPXITW 760
           V + PR +V  +           L C+ +G P P I W
Sbjct: 706 VKVPPRWIVEPTDVSVERNKHVALHCQAQGVPTPTIVW 743


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 31.9 bits (69), Expect = 0.008
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 360 PGTTIELTCEAAGSPAPSVHW 422
           PG  + L C AAG+P P V W
Sbjct: 435 PGPAVSLKCSAAGNPTPQVTW 455



 Score = 26.2 bits (55), Expect = 0.38
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +2

Query: 659 PRIVVSYSTYVDNIGXGXVLPCRVKGHPKPXITW-FNGXNVP 781
           P ++ S+       G    L C   G+P P +TW  +G  +P
Sbjct: 422 PMLLYSFIEQTLQPGPAVSLKCSAAGNPTPQVTWALDGFALP 463



 Score = 25.8 bits (54), Expect = 0.50
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +3

Query: 339 LPSYAHTPGTTIELTCEAAGSPAPSVHW 422
           +P      G T+ L C  AG P   + W
Sbjct: 525 IPKVTAVAGETLRLKCPVAGYPIEEIKW 552



 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 372 IELTCEAAGSPAPSVHWFK 428
           + L C+A G P P++ W K
Sbjct: 723 VALHCQAQGVPTPTIVWKK 741



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +2

Query: 701 GXGXVLPCRVKGHPKPXITWFNGXNVPIEKNP 796
           G    L C V G     +TW  G    IE NP
Sbjct: 818 GDTATLHCEVHGDTPVTVTWLKGGK--IELNP 847



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
 Frame = +3

Query: 297 SDGSHKYLSITQGPLPSYAHTPGTTIE--------LTCEAAGSPAPSVHWFKND 434
           S G H + +  +GP  S+   P + +E        L C A GSP  ++ W   D
Sbjct: 17  SAGGHGFDAHLRGP--SFVMEPPSRVEFSNSSGAWLDCTATGSPPLNIDWSTAD 68



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +2

Query: 638 R*AVPLKPRIVVSYSTYVDNIGXGXVLPCRVKGHPKPXITW 760
           R  V + PR +V  +           L C+ +G P P I W
Sbjct: 699 RLVVHVPPRWIVEPTDVSVERNKHVALHCQAQGVPTPTIVW 739


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 29.5 bits (63), Expect = 0.041
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 701 GXGXVLPCRVKGHPKPXITWFNGXNVPIEKNPXXK-VLXSG 820
           G G V+ C+ +G+P+P I W       +   P  + VL +G
Sbjct: 18  GTGAVVECQARGNPQPDIIWVRADGSAVGDVPGLRQVLPNG 58



 Score = 27.9 bits (59), Expect = 0.12
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 360 PGTTIELTCEAAGSPAPSVHW 422
           PG ++ L C A+G+P P + W
Sbjct: 407 PGPSMFLKCVASGNPTPEITW 427



 Score = 26.6 bits (56), Expect = 0.29
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 363 GTTIELTCEAAGSPAPSVHWFKND 434
           GT   + C+A G+P P + W + D
Sbjct: 18  GTGAVVECQARGNPQPDIIWVRAD 41



 Score = 26.2 bits (55), Expect = 0.38
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 363 GTTIELTCEAAGSPAPSVHWFKNDSPV 443
           G     TC   G+P  +V W K+  P+
Sbjct: 322 GRPATFTCNVRGNPIKTVSWLKDGKPL 348



 Score = 25.8 bits (54), Expect = 0.50
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 647 VPLKPRIVVSYSTYVDNIGXGXVLPCRVKGHPKPXITW 760
           V + PR ++  +      G    + C+  G PKP +TW
Sbjct: 675 VNVPPRWILEPTDKAFAQGSDARVECKADGFPKPQVTW 712



 Score = 25.4 bits (53), Expect = 0.66
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 659 PRIVVSYSTYVDNIGXGXVLPCRVKGHPKPXITW 760
           P+I  +++      G    L C   G+P P ITW
Sbjct: 394 PQIRQAFAEETLQPGPSMFLKCVASGNPTPEITW 427



 Score = 25.0 bits (52), Expect = 0.88
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = +3

Query: 351 AHTPGTTIELTCEAAGSPAPSVHWFK--NDSP 440
           A   G+   + C+A G P P V W K   D+P
Sbjct: 689 AFAQGSDARVECKADGFPKPQVTWKKAAGDTP 720



 Score = 25.0 bits (52), Expect = 0.88
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 372  IELTCEAAGSPAPSVHW 422
            ++L C A G PAP V W
Sbjct: 1294 VKLPCLAVGVPAPEVTW 1310



 Score = 24.6 bits (51), Expect = 1.2
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = +3

Query: 372 IELTCEAAGSPAPSVHWFK-NDSPVYEYDVESNELIGSSPTSIARISSTLIVTRTTSQD- 545
           + L C A G P P   W+K  +       V+ NE        + ++S TLI+     +D 
Sbjct: 230 LPLLCPAQGFPVPVHRWYKFIEGSSRRQPVQLNE-------RVRQVSGTLIIREARVEDS 282

Query: 546 -VYTCL 560
             Y C+
Sbjct: 283 GKYLCI 288



 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 716  LPCRVKGHPKPXITW 760
            LPC   G P P +TW
Sbjct: 1296 LPCLAVGVPAPEVTW 1310



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 680 STYVDNIGXGXVLPCRVKGHPKPXITW 760
           ST   + G      C V+G+P   ++W
Sbjct: 315 STQTIDFGRPATFTCNVRGNPIKTVSW 341


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 363 GTTIELTCEAAGSPAPSVHWFKNDSPVYEY 452
           G  I   C A G P P + W K+   +Y +
Sbjct: 37  GRKITFFCMATGFPRPEITWLKDGIELYHH 66



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 722 CRVKGHPKPXITW 760
           C   G P+P ITW
Sbjct: 44  CMATGFPRPEITW 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,767
Number of Sequences: 438
Number of extensions: 3912
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)