Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_B02
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   231   7e-62
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   231   1e-61
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   6.1  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    26   8.1  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  231 bits (566), Expect = 7e-62
 Identities = 118/256 (46%), Positives = 160/256 (62%)
 Frame = +2

Query: 29  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
           MSH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 388
           DRPGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK
Sbjct: 61  DRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120

Query: 389 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIPLL*CCKSHCPHSNESCXNSDKRRLT 568
           NW+             + +    +SI ++ +++       +    H+        +++  
Sbjct: 121 NWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRV-LAHTQIRKTPLAQKKAH 177

Query: 569 LWKSXFTGGTIEDXVKWPREHLEKPYPCRFCVXPKMK*LTAXGVXXGHRIQGGPXXVGPQ 748
           L +    GG++ D V+W REH EK    +     + + +   GV  G   +G     G +
Sbjct: 178 LMEIQVNGGSVADKVEWAREHFEKTVDIK-STFEQNEMIDVIGVTRGKGNEGTTARWGTK 236

Query: 749 XSYPXXTPQGVXRKXC 796
              P  T +G+ +  C
Sbjct: 237 -RLPRKTHRGLRKVAC 251


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  231 bits (565), Expect = 1e-61
 Identities = 117/256 (45%), Positives = 160/256 (62%)
 Frame = +2

Query: 29  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
           MSH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 388
           DRPGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK
Sbjct: 61  DRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120

Query: 389 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIPLL*CCKSHCPHSNESCXNSDKRRLT 568
           NW+             + +    +SI ++ +++       +    H+        +++  
Sbjct: 121 NWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRV-LAHTQIRKTPLAQKKAH 177

Query: 569 LWKSXFTGGTIEDXVKWPREHLEKPYPCRFCVXPKMK*LTAXGVXXGHRIQGGPXXVGPQ 748
           L +    GG++ D V+W REH EK    +     + + +   GV  G   +G     G +
Sbjct: 178 LMEIQVNGGSVADKVEWAREHFEKTVDIK-STFEQNEMIDVIGVTRGKGNEGTTARWGTK 236

Query: 749 XSYPXXTPQGVXRKXC 796
              P  T +G+ +  C
Sbjct: 237 -RLPRKTHRGLRKVAC 251


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 303 TLRPLMDYALC*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 455
           TL    DYA+   S +S+ LK   V+   T T  RRR +    RN  + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -3

Query: 205 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESHRPMTGC*KF 41
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH   T    F
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTF 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,276,343
Number of Sequences: 5004
Number of extensions: 64909
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)