Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_A24
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.40 
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    25   0.70 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    23   4.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   8.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   8.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +2

Query: 137  ESRKAPPSPRYYSVCISTIYSGLRRPIWRSSPMTPP 244
            E  + P S   YS  I + YS L R  WR     PP
Sbjct: 1324 EDHRRPLSEHIYS-SIDSDYSTLERTAWRQQQPPPP 1358


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 406 IPLPTRRVNNPAPAVRPITMFDQPIPWAPKVKY 504
           +PLP    N P P  RP   F    P+ PK+K+
Sbjct: 21  VPLP----NVPQPGRRPFPTFPGQGPFNPKIKW 49


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 268 ALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLS 405
           A LH  +         W +  +I++NP+ +  V  KR   P+  ++
Sbjct: 825 ATLHCEVHGDTPVTVTWLKGGKIELNPSTNYRVTVKREVTPDGVIA 870


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 268 ALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLS 405
           A LH  +         W +  +I++NP+ +  V  KR   P+  ++
Sbjct: 821 ATLHCEVHGDTPVTVTWLKGGKIELNPSTNYRVTVKREVTPDGVIA 866


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 434  TPPPPFAQSRCSTSPYRGPRRS 499
            TP P  AQ       YRGP  S
Sbjct: 1339 TPVPRLAQDSSEDESYRGPSAS 1360


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 406 IPLPTRRVNNPAPAVRPITMFDQPIPWAPKV 498
           +PLP    N P P  RP   F    P+ PK+
Sbjct: 7   VPLP----NVPQPGRRPFPTFPGQGPFNPKI 33


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 185 STIYSGLRRPIWRSSPMTPP 244
           STI S +R  +  S PM PP
Sbjct: 804 STILSPVREKLSSSQPMQPP 823


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 113 PGPVTSQPESRKAPPSPRYYSVCISTIYSGLRRP 214
           PG V   PE++  PPS    +  + T  + LR P
Sbjct: 287 PGEVDLPPETQPTPPS----ATLVGTTITHLRDP 316


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 489 GPRYGLVEHRDWANGGG 439
           GPR GL+    W  GGG
Sbjct: 152 GPRNGLLPLLVWIYGGG 168


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 489 GPRYGLVEHRDWANGGG 439
           GPR GL+    W  GGG
Sbjct: 152 GPRNGLLPLLVWIYGGG 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,543
Number of Sequences: 438
Number of extensions: 5939
Number of successful extensions: 23
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)