Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_A23
         (846 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   1.2  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    24   1.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.7  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +3

Query: 24  DYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPXTIQFVYQRYTPVSGRPIWRSS--PM 197
           D+L+N +          +P+HV  G PQ   L+  T Q   Q++      P+  SS  P 
Sbjct: 87  DWLANANSPVGSPSAALQPQHVVYGNPQQQQLAAETQQ--QQQHNNGYASPMSTSSYDPY 144

Query: 198 TPPSTTRVGR 227
           +P S  ++GR
Sbjct: 145 SPNS--KIGR 152


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 368 IPLPTRRVNNPAPAVRPITMYDQPIPWAPKVKY 466
           +PLP    N P P  RP   +    P+ PK+K+
Sbjct: 21  VPLP----NVPQPGRRPFPTFPGQGPFNPKIKW 49


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +1

Query: 10  SSSYETTCRTVRSDIESRERVPGPVTSQPESRKAPPSPRLLFSLYINDIPR 162
           +++Y   C+ +  +I + E++P PV         PP P   +      IPR
Sbjct: 344 NNNYNNNCKKLYYNIINIEQIPVPVPVPIYCGNFPPRPMGPWISIQEQIPR 394


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +2

Query: 230 ALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLS 367
           A LH  +         W +  +I++NP+ +  V  KR   P+  ++
Sbjct: 825 ATLHCEVHGDTPVTVTWLKGGKIELNPSTNYRVTVKREVTPDGVIA 870


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +2

Query: 230 ALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLS 367
           A LH  +         W +  +I++NP+ +  V  KR   P+  ++
Sbjct: 821 ATLHCEVHGDTPVTVTWLKGGKIELNPSTNYRVTVKREVTPDGVIA 866


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 73  PGPVTSQPESRKAPPSPRLL 132
           PG V   PE++  PPS  L+
Sbjct: 287 PGEVDLPPETQPTPPSATLV 306


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 396  TPPPPFAQSRCTTSPYRGPRRS 461
            TP P  AQ       YRGP  S
Sbjct: 1339 TPVPRLAQDSSEDESYRGPSAS 1360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,881
Number of Sequences: 438
Number of extensions: 6164
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)