Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_P19
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   294   1e-80
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    29   0.57 
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    29   0.76 
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    26   7.0  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   9.3  
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    25   9.3  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   9.3  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  294 bits (721), Expect = 1e-80
 Identities = 132/220 (60%), Positives = 170/220 (77%), Gaps = 1/220 (0%)
 Frame = -1

Query: 736 RGPGKEDQKEWF-LSPTRPXCSRRKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVXKI 560
           RG  ++++KEW  ++         KI  +E IYL+SLPIKE++I+D+FL P LNDEV K+
Sbjct: 24  RGAKRDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKV 82

Query: 559 MPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGY 380
           +PVQKQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGY
Sbjct: 83  VPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGY 142

Query: 379 WGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGS 200
           WG  +G PHTVP KV+GKCGSVTVRL+PAPRG G+V+APV K+ LQ+AG++DCYT +RGS
Sbjct: 143 WGTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGS 202

Query: 199 TGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSEF 80
           T TLGNF              LTP+LW + P  ++P  E+
Sbjct: 203 TKTLGNFVKAAFAAASLTYGILTPNLWAERPFGQTPIEEY 242


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 28/118 (23%), Positives = 50/118 (42%)
 Frame = -1

Query: 553 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWG 374
           V  QTR G+         +G+ NG  G G   ++  + A + +   A  +++ + R Y  
Sbjct: 235 VVNQTRKGKIASMYVLTVVGNRNGVAGFGEGKAESYSLAYKQSCGRAVKNMVYIPR-Y-- 291

Query: 373 NKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGS 200
                  TV   +  K  +V + L   P G G+   P+  ++ + AG++D      GS
Sbjct: 292 ----DKRTVYGVIHKKFHAVRLTLRSRPAGFGLRCNPILHEICRCAGIKDISGEILGS 345


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -2

Query: 255 RSFFRWLVYRTATPQLVVQL 196
           RS F+WL+  TATP+L+V L
Sbjct: 69  RSVFQWLIALTATPRLLVLL 88


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 362 KATHRPLQGHRQVWFCNSPADSCPSWYWN 276
           +A    L G  +   C   + SCPS++WN
Sbjct: 153 RADRAKLDGLYECILCACCSTSCPSYWWN 181


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 401 NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 535
           +R LS     + GSG     L    N+T+ +A+G     T  +SG
Sbjct: 373 SRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417


>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -1

Query: 574 EVXKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG-AIILAKLSV 401
           E+ +++PVQK   AGQ   F   +   D     G  +   +  A  ++G  I+LA+L V
Sbjct: 123 EIDQVIPVQKILNAGQNLWFNEIILFEDELADNGKSMFDVR--ARVVQGHLILLARLVV 179


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 739 GRGPGKEDQKEWFLSPTRPXCSRRKIDKLESIYLFSLPI 623
           G G  +EDQ + +L   +   +R+ ID   +++ FSL +
Sbjct: 501 GVGLDEEDQFDTWLDDAQSFIARKCIDCARAVFAFSLRV 539


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,290,398
Number of Sequences: 5004
Number of extensions: 72164
Number of successful extensions: 200
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)