Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_T7_P19
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 303 1e-82
07_01_0756 + 5819367-5820038,5820847-5821005 298 3e-81
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 108 6e-24
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 46 3e-05
07_03_0681 + 20659789-20659839,20660030-20660170,20661294-206613... 30 2.4
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 4.2
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 29 4.2
07_03_0714 + 20885468-20885473,20885625-20885715,20886469-208865... 29 5.5
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 303 bits (743), Expect = 1e-82
Identities = 144/234 (61%), Positives = 174/234 (74%)
Frame = -1
Query: 781 GPGGXXEXVXVXXRGRGPGKEDQKEWFLSPTRPXCSRRKIDKLESIYLFSLPIKEFEIID 602
G GG + RGP +E++K ++ + K+E IYL SLP+KE +I++
Sbjct: 20 GRGGRGDRGGRRGGRRGPRQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVE 79
Query: 601 FFLGPSLNDEVXKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAI 422
+ P L DEV KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAI
Sbjct: 80 TLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAI 138
Query: 421 ILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQ 242
ILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ
Sbjct: 139 ILAKLSVVPVRRGYWGNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQ 198
Query: 241 MAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSEF 80
AG++D +TS+RGST TLGNF +LTPD WRD KSP+ E+
Sbjct: 199 FAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPDFWRDTKFVKSPFQEY 252
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 298 bits (732), Expect = 3e-81
Identities = 140/219 (63%), Positives = 170/219 (77%)
Frame = -1
Query: 736 RGPGKEDQKEWFLSPTRPXCSRRKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVXKIM 557
RGP +E++K ++ KI K+E IYL SLP+KE +I++ + P L DEV KI
Sbjct: 38 RGPRQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKIT 96
Query: 556 PVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYW 377
PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYW
Sbjct: 97 PVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYW 156
Query: 376 GNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 197
GNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST
Sbjct: 157 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTSSRGST 216
Query: 196 GTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSEF 80
TLGNF +LTPD WR+ K+P+ E+
Sbjct: 217 KTLGNFVKATFDCLMKTYGFLTPDFWRETRFIKTPFQEY 255
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 108 bits (259), Expect = 6e-24
Identities = 58/111 (52%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = -1
Query: 508 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG-KPHTVPCKVT 332
FV +GD + HI LGVKC+K AT + GAIILA + G I KPHTV CKV
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTVSCKVA 56
Query: 331 GKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 179
K GSVTVR++ P G+ +V+ VPKK+L+ AG++D +TS+RGST TL NF
Sbjct: 57 DKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSNF 107
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/63 (33%), Positives = 38/63 (60%)
Frame = -1
Query: 580 NDEVXKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 401
++ V ++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 400 LPV 392
+ V
Sbjct: 231 VTV 233
>07_03_0681 +
20659789-20659839,20660030-20660170,20661294-20661399,
20661625-20661806,20661888-20662113,20662198-20662624,
20662844-20663189,20663271-20663849
Length = 685
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 335 DLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMT 484
DL D ++ + + + W NR +++ + G G ALH TNM+
Sbjct: 354 DLDEDNRGMAQIRDDLAGAMWNNRGMAEAGGGNGGHGGHHGALHWTTNMS 403
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 446 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 562
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>09_06_0198 -
21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +2
Query: 344 RDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANG 502
R VW++D TPVT+S+ LS NS++ D + TN+T A G
Sbjct: 105 RTVVWVADRGTPVTNSSSSAPTLSLTNSSNLVLSDADGGVRWTTNITDDAAGG 157
>07_03_0714 +
20885468-20885473,20885625-20885715,20886469-20886537,
20887142-20887251,20887694-20887786
Length = 122
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 581 QGRAEEEINDLEFFDW*RKQVNALEFVDFPSRTXRXSW*QEPLFLVFLAGPT 736
+ R +EI DLE + +V A + D P + W + +VF+A PT
Sbjct: 3 ENRLRQEIEDLEKDTGYKLRVLAQNYPDTPGLAIKDFWQVDDQTIVFVADPT 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,919,181
Number of Sequences: 37544
Number of extensions: 543285
Number of successful extensions: 1403
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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