Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_T7_P19
(787 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 303 1e-82
Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z80220-3|CAB02306.1| 601|Caenorhabditis elegans Hypothetical pr... 28 8.7
AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 28 8.7
AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 28 8.7
AF067948-6|AAC17701.1| 337|Caenorhabditis elegans Seven tm rece... 28 8.7
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 303 bits (743), Expect = 1e-82
Identities = 151/216 (69%), Positives = 167/216 (77%), Gaps = 1/216 (0%)
Frame = -1
Query: 733 GPGKEDQKEWF-LSPTRPXCSRRKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVXKIM 557
G G E + EW ++ +KI LE IYL SLPIKEFEIID L +L DEV KI
Sbjct: 48 GRGGEKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKIS 106
Query: 556 PVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYW 377
PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVRRGYW
Sbjct: 107 PVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYW 166
Query: 376 GNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 197
GNKIG PHTVPCKVTGKC SV VRLIPAPRGTGIVSAPVPKKLL MAG++DCYT+A+GST
Sbjct: 167 GNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGST 226
Query: 196 GTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPY 89
TLGNF YLTPDLW++ L KSPY
Sbjct: 227 ATLGNFAKATYAALQRTYSYLTPDLWKEEALEKSPY 262
>Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 328 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 197
+C + V PRG G+ P K+ + G++D Y GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
>Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 328 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 197
+C + V PRG G+ P K+ + G++D Y GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
>Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical
protein C30F2.3 protein.
Length = 403
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 383 TSSNW*NRQLSKDNSASNGSG 445
TS+NW N QL NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329
>Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 503 NKCLETCALSGTCLFLYR-HDLXNLIIQGR 589
++CLE C +S C F Y+ D+ N +I R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315
>Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 503 NKCLETCALSGTCLFLYR-HDLXNLIIQGR 589
++CLE C +S C F Y+ D+ N +I R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315
>Z80220-3|CAB02306.1| 601|Caenorhabditis elegans Hypothetical
protein T08G11.3 protein.
Length = 601
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = +2
Query: 266 RRHNSSTTRGRNQPDCYRTTLAGDLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSG 445
R N ++T N P +T D R S L P +SSN + SK ++ +
Sbjct: 419 RNTNDTSTHSINAPFEGESTNHADFQRKQAEKSKLTRPHSSSNLLSPNASKFDATTTTRA 478
Query: 446 DFLAALHTQ 472
DF+ H +
Sbjct: 479 DFIQKPHVR 487
>AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor
NHR-121 protein.
Length = 461
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -3
Query: 566 KDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 426
++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 54 RNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 121 protein.
Length = 461
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -3
Query: 566 KDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 426
++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 54 RNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF067948-6|AAC17701.1| 337|Caenorhabditis elegans Seven tm
receptor protein 30 protein.
Length = 337
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 255 RSFFRWLVYRTATPQLVVQLAPWEILLKPHMLPLPRHMPTSLLTC 121
R FF+ L+Y+ +P + P ++L L ++PT L+ C
Sbjct: 241 RQFFKSLIYQITSPTFTFYI-PAILILTVPFFDLKFNLPTGLIVC 284
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,765,553
Number of Sequences: 27780
Number of extensions: 432644
Number of successful extensions: 1245
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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