Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_P17
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    52   1e-07
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    27   3.5  
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    27   4.6  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    26   8.1  

>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 28/79 (35%), Positives = 41/79 (51%)
 Frame = -1

Query: 431 QRAAIAXQARLEHTAHSSKEWLARASRAYTSWVRFYSGYPRDVRQYLDPKLLHLGHAAKA 252
           Q  A   Q  LE     ++     A RA+TS+VR Y+ +    R   + + LHLGH AK+
Sbjct: 595 QDRATEWQLELERFILENEPMRNIAKRAFTSYVRAYATHLSSERSIFNMRDLHLGHIAKS 654

Query: 251 FALRDTPAALARRTKSDPK 195
           FALR+ P  ++    S P+
Sbjct: 655 FALREAPGKISGANSSKPR 673


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 430 NAPPSRYKPASNTPRTAQRNGSLGPVE 350
           NAPP    P   TP T Q + S  PV+
Sbjct: 354 NAPPYPSAPTRPTPPTVQTSSSAAPVD 380


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 439 RACNAPPSRYKPASNTPRTAQRNGSLGPVERT 344
           R  N+  +R  PASN   TA +NG+     +T
Sbjct: 137 RQLNSLAARVSPASNASATASKNGAKSSKRKT 168


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 284 KLLHLGHAAKAFALRDTPAALARRTKSDPKLKKERPVN 171
           KL  L H   +  L D    L RR  +DPK++   PV+
Sbjct: 36  KLQRLSHIQFSELLTDVADELQRRINNDPKVRFLPPVD 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,816
Number of Sequences: 5004
Number of extensions: 46117
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)