Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_T7_P17
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0079 + 531617-531734,531987-532059,532152-532261,532400-53... 50 2e-06
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 32 0.69
09_02_0580 + 10884012-10884081,10884173-10884419,10884472-108847... 32 0.69
02_03_0235 - 16702768-16702956,16703956-16704492,16705084-167052... 26 1.9
08_01_0741 + 6825261-6825374,6826467-6826617,6826711-6826961 30 2.8
08_01_0731 - 6660218-6660468,6660562-6660712,6661771-6661884 30 2.8
10_01_0105 + 1287423-1289924 29 4.9
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 29 6.4
07_03_0708 - 20865786-20867153 28 8.5
>05_01_0079 +
531617-531734,531987-532059,532152-532261,532400-532543,
532628-532736,532836-533182,533260-533333,533478-533782,
534168-534294,534385-534414,534589-534837
Length = 561
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Frame = -1
Query: 392 TAHSSKEWLARASRAYTSWVRFYSGYPRDVRQYLDPKLLHLGHAAKAFALRDTPAALARR 213
T+ + + LAR A+ SWVR Y+ + ++++ K LHLGH A++F L++ P+ L R
Sbjct: 477 TSEDTTKKLARD--AFCSWVRAYTAHRGELKKIFMVKKLHLGHVARSFGLKEQPSLLGRS 534
Query: 212 -----TKSDPKLKKERPVNR 168
K + K+ERP R
Sbjct: 535 HQVQLKKRKKEQKRERPAKR 554
>12_01_0798 +
7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 31.9 bits (69), Expect = 0.69
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 245 LRDTPAALARRTKSDPKLKKERPVNRLTVHDEEERKRPGF 126
+++ AL RRT + +LK P+ + VHD +RPGF
Sbjct: 139 IKENGEALTRRTSN--QLKLSYPIVNIVVHDGSSSERPGF 176
>09_02_0580 +
10884012-10884081,10884173-10884419,10884472-10884735,
10885630-10886093,10888326-10888396
Length = 371
Score = 31.9 bits (69), Expect = 0.69
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 322 RATLATCVSTWIPNCCTSVTRLKPSL*ETPLRPSPGELSPILN 194
R + ++W+P C + R P + LRP GEL P LN
Sbjct: 128 REAMFVAWASWVPVCLVNTGRGTPFVSAVELRPLGGELYPALN 170
>02_03_0235 -
16702768-16702956,16703956-16704492,16705084-16705233,
16705310-16705625,16707005-16707286,16707895-16707971,
16708121-16708186,16708700-16709246,16709435-16709565,
16709642-16709746,16709859-16710039,16710123-16710185,
16711000-16711109,16711576-16711638,16711859-16712191
Length = 1049
Score = 25.8 bits (54), Expect(2) = 1.9
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -3
Query: 699 PLWPWXXPWS 670
P WPW PWS
Sbjct: 37 PRWPWPWPWS 46
Score = 23.0 bits (47), Expect(2) = 1.9
Identities = 6/10 (60%), Positives = 6/10 (60%)
Frame = -3
Query: 693 WPWXXPWSXP 664
WPW WS P
Sbjct: 41 WPWPWSWSWP 50
>08_01_0741 + 6825261-6825374,6826467-6826617,6826711-6826961
Length = 171
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/71 (19%), Positives = 34/71 (47%)
Frame = -1
Query: 245 LRDTPAALARRTKSDPKLKKERPVNRLTVHDEEERKRPGFPKVKIGFNSRVMNKQSSMHT 66
LRD + + P+ ++ RP +R ++H+E + +R + + ++ ++ + +
Sbjct: 97 LRDEMPTMVPCIQRQPRRRRARPSSRSSIHEEADSQRREQTVIHVDADNEMVGDEVPPYK 156
Query: 65 ASEFDSGLPPL 33
+ GL PL
Sbjct: 157 EVRREGGLHPL 167
>08_01_0731 - 6660218-6660468,6660562-6660712,6661771-6661884
Length = 171
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/71 (19%), Positives = 34/71 (47%)
Frame = -1
Query: 245 LRDTPAALARRTKSDPKLKKERPVNRLTVHDEEERKRPGFPKVKIGFNSRVMNKQSSMHT 66
LRD + + P+ ++ RP +R ++H+E + +R + + ++ ++ + +
Sbjct: 97 LRDEMPTMVPCIQRQPRRRRARPSSRSSIHEEADSQRREQTVIHVDADNEMVGDEVPPYK 156
Query: 65 ASEFDSGLPPL 33
+ GL PL
Sbjct: 157 EVRREGGLHPL 167
>10_01_0105 + 1287423-1289924
Length = 833
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 341 SWVRFYSGYPRDVRQYLDPKLLHLGH 264
SW FY PR + + ++LHLGH
Sbjct: 529 SWNMFYGSLPRWIGDLVTLRILHLGH 554
>01_07_0290 -
42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -2
Query: 409 KPASNTPRTAQRNGSLGPVERTHHGCGFTRATLATCVSTWIPNCCTSVTRLKP 251
K SN + ++ G LGP + H+G ++ + C+S + CC S P
Sbjct: 661 KSDSNMNKVVEQLGFLGP-QLQHNGRLYSSRLVEDCLSKSLHRCCGSTNCCNP 712
>07_03_0708 - 20865786-20867153
Length = 455
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -2
Query: 442 RRACNAPPSRYKPASNTPRTAQRNGSLGPVERTHHGCGFTRATLAT 305
R CN +Y P S+ PRT N + +G G+T LAT
Sbjct: 145 RLPCNGSFCQYLPTSSRPRTC--NATAACAYNYTYGSGYTAGYLAT 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,494,526
Number of Sequences: 37544
Number of extensions: 373217
Number of successful extensions: 1033
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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