Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_P17
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-23|CAB11557.2|  399|Caenorhabditis elegans Hypothetical p...    32   0.47 
U58732-3|AAL02519.1|   76|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U58732-2|AAB00594.2|   98|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U58732-1|AAL02520.1|   96|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U39653-4|AAL56624.1|  649|Caenorhabditis elegans Prion-like-(q/n...    29   5.7  
Z50741-6|CAA90613.3|  331|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AL032630-15|CAA21571.3|  331|Caenorhabditis elegans Hypothetical...    28   7.6  

>Z98866-23|CAB11557.2|  399|Caenorhabditis elegans Hypothetical
           protein Y49E10.24 protein.
          Length = 399

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +3

Query: 99  AIKTDLHFGEARPLPFFFVVDCKSVDGSLFLQFRIGLSSPGEGRRGVSQSE 251
           +I+T++    +RP+      +C  +    FL +R G+S P +GRR  S SE
Sbjct: 198 SIETNIDNMSSRPI---LKTECYLIQQCRFLAYRYGISGPTDGRRASSLSE 245


>U58732-3|AAL02519.1|   76|Caenorhabditis elegans Hypothetical
           protein F48D6.4b protein.
          Length = 76

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -1

Query: 287 PKLLHLGHAA--KAFALRDTPAALARRTKSDPKLKKERPVNRLTVHDEEERKRPGFPKVK 114
           PKL+ +  +A    F  R+  ++   R  ++PK+  ++P   + +HDE    + GFPK +
Sbjct: 4   PKLVRVAQSAVFNQFMTREAISSATFRP-AEPKMM-DQPKMNIRIHDESTHLKFGFPKTE 61


>U58732-2|AAB00594.2|   98|Caenorhabditis elegans Hypothetical
           protein F48D6.4a protein.
          Length = 98

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -1

Query: 287 PKLLHLGHAA--KAFALRDTPAALARRTKSDPKLKKERPVNRLTVHDEEERKRPGFPKVK 114
           PKL+ +  +A    F  R+  ++   R  ++PK+  ++P   + +HDE    + GFPK +
Sbjct: 4   PKLVRVAQSAVFNQFMTREAISSATFRP-AEPKMM-DQPKMNIRIHDESTHLKFGFPKTE 61


>U58732-1|AAL02520.1|   96|Caenorhabditis elegans Hypothetical
           protein F48D6.4c protein.
          Length = 96

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -1

Query: 287 PKLLHLGHAA--KAFALRDTPAALARRTKSDPKLKKERPVNRLTVHDEEERKRPGFPKVK 114
           PKL+ +  +A    F  R+  ++   R  ++PK+  ++P   + +HDE    + GFPK +
Sbjct: 4   PKLVRVAQSAVFNQFMTREAISSATFRP-AEPKMM-DQPKMNIRIHDESTHLKFGFPKTE 61


>U39653-4|AAL56624.1|  649|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
           isoform b protein.
          Length = 649

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 29/83 (34%), Positives = 35/83 (42%)
 Frame = -1

Query: 278 LHLGHAAKAFALRDTPAALARRTKSDPKLKKERPVNRLTVHDEEERKRPGFPKVKIGFNS 99
           L L  AA+  ALR        + KS  K   +RPV    V   +  K+P   K K   NS
Sbjct: 560 LALARAAEQEALRKKAMEPKLKRKSRAKNSAKRPVQTDAVETVKLEKKPAQSKSK--KNS 617

Query: 98  RVMNKQSSMHTASEFDSGLPPLE 30
           R  +  SS    S   S L PLE
Sbjct: 618 RSKSTPSSFANDS---SSLEPLE 637


>Z50741-6|CAA90613.3|  331|Caenorhabditis elegans Hypothetical
           protein Y62H9A.14 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/62 (24%), Positives = 22/62 (35%)
 Frame = -2

Query: 478 NVWKRXVALHRRRRACNAPPSRYKPASNTPRTAQRNGSLGPVERTHHGCGFTRATLATCV 299
           N+W   + ++  +   N  PS+Y  AS           L    + H GC        T  
Sbjct: 255 NIWNSSIDINSTKTLPNTKPSQYGQASRRKTIVPMKVILVDSRKEHSGCNIQFGGFPTSS 314

Query: 298 ST 293
           ST
Sbjct: 315 ST 316


>AL032630-15|CAA21571.3|  331|Caenorhabditis elegans Hypothetical
           protein Y62H9A.14 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/62 (24%), Positives = 22/62 (35%)
 Frame = -2

Query: 478 NVWKRXVALHRRRRACNAPPSRYKPASNTPRTAQRNGSLGPVERTHHGCGFTRATLATCV 299
           N+W   + ++  +   N  PS+Y  AS           L    + H GC        T  
Sbjct: 255 NIWNSSIDINSTKTLPNTKPSQYGQASRRKTIVPMKVILVDSRKEHSGCNIQFGGFPTSS 314

Query: 298 ST 293
           ST
Sbjct: 315 ST 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,309,522
Number of Sequences: 27780
Number of extensions: 279637
Number of successful extensions: 772
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)