Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_P15
         (829 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   190   1e-48
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   187   8e-48
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.4  
06_03_0543 + 21967787-21970261                                         29   6.0  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   7.9  
11_06_0499 + 24354810-24355212,24355677-24355735,24355846-243559...    28   7.9  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  190 bits (463), Expect = 1e-48
 Identities = 87/159 (54%), Positives = 113/159 (71%)
 Frame = -1

Query: 790 ARAXVAIENPXDVFVXSSRPFGQRAVXKFAAHTGVRXLRDVSHQVXLLTQIQAAFREPRL 611
           AR  VAIENP D+ V S+RP+GQRAV KFA +TG   +           Q+Q +F EPRL
Sbjct: 66  ARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRL 125

Query: 610 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLARE 431
           LI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++WLLAR 
Sbjct: 126 LILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARM 185

Query: 430 VLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 314
           VL++RG +    +WDV+VDLFFYRDPEE+++ E++A  Q
Sbjct: 186 VLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  187 bits (456), Expect = 8e-48
 Identities = 85/155 (54%), Positives = 110/155 (70%)
 Frame = -1

Query: 790 ARAXVAIENPXDVFVXSSRPFGQRAVXKFAAHTGVRXLRDVSHQVXLLTQIQAAFREPRL 611
           AR  VAIENP D+ V S+RP+GQRAV KFA +TG   +           Q+Q +F EPRL
Sbjct: 66  ARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRL 125

Query: 610 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLARE 431
           LI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR 
Sbjct: 126 LILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARM 185

Query: 430 VLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 326
           VL++RG +    +WDV+VDLFFYRDPEE+++ E++
Sbjct: 186 VLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 206 TRCSSCFWSTPCSRRMVCPGTR*VEHN 126
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 457 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 368
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 206 TRCSSCFWSTPCSRRMVCPGTR*VEHN 126
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


>11_06_0499 +
           24354810-24355212,24355677-24355735,24355846-24355929,
           24356040-24356337,24357026-24357203,24357686-24357746,
           24358209-24358391,24358581-24358742,24358844-24359037,
           24359354-24359504,24359551-24359578,24359845-24360117,
           24360660-24360724
          Length = 712

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -1

Query: 763 PXDVFVXSSRPFGQRAVXKFAAHTGVRXLRDV---SHQVXLLTQIQAAFREPRLLIVLDP 593
           P  ++   SRPF  R   +F   T  +        SHQ  L+  +QAA R P  +  ++ 
Sbjct: 592 PTSLWSHLSRPFEIRTAFRFVKFTLGKCFHAFLLFSHQRKLILNLQAAIRPPTFVFFVND 651

Query: 592 AQ 587
           A+
Sbjct: 652 AK 653


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,681,406
Number of Sequences: 37544
Number of extensions: 422461
Number of successful extensions: 1106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)