Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_P12
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         29   1.2  
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    29   1.2  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    28   1.6  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    28   1.6  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    27   4.9  
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    26   8.5  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   8.5  

>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +1

Query: 760 GGVVXDIFGKSVDFG 804
           GGVV D+FGK +DFG
Sbjct: 298 GGVVSDMFGKPLDFG 312


>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 318 LTTRKLAERLGVQQPALYWHFRNKR 244
           +  +KLAE LG+ QP + WH    R
Sbjct: 210 MVQQKLAEELGLLQPEIAWHTERDR 234


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = -2

Query: 903 MRFXPYINWXGYXLTHRGFPSSTPLTSMGVCFGTKINGLSKNVXNNSAPLTQMGGRRVRW 724
           + F P IN   + + H G   S  LT + +C G K +  + N   N   L + G    R 
Sbjct: 113 INFGPRIN---FVIGHNGSGKSAILTGLTICLGAKAS--NTNRAPNMKSLVKQGKNYARI 167

Query: 723 EVYIS 709
            V IS
Sbjct: 168 SVTIS 172


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 617 GGWIGPGVFYGGQNSVDGV 673
           GGW+ P ++Y G++SV  V
Sbjct: 106 GGWVAPNIYYMGRSSVINV 124


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = +1

Query: 265 VKRRLLNPQPFRQFACRQTVYADLVQQVQXRHGSLYSAATLSCL 396
           + +  + P  F+ F+  +T+Y +L   +     + +  AT SC+
Sbjct: 703 ISKLSIQPPTFQLFSTLETIYLELKDSMPPNEAADWMIATTSCM 746


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = -1

Query: 706 SSFSEPVRSPGDAIHAVLTSIEDTGTDPASGL*PRPRDG*QFHTGNSYD 560
           + ++EP+     +  A+ +  +DT T    G  P  +DG  ++T   +D
Sbjct: 95  NQYAEPIEESSPSYQALSSMAKDTKTYLFGGSIPERKDGKLYNTAMVFD 143


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 19/81 (23%), Positives = 37/81 (45%)
 Frame = -1

Query: 859 SPGISKFHPIDVNGSLFWHQNQRTFQKCRKQLRPIDANGR*ACTVGGLYKQSSFSEPVRS 680
           SP + K    +   +  ++ + R  ++    +  I+AN   +  +  L K +S  EPVR 
Sbjct: 2   SPNVQKRPSSEDIKTQEFYDSTRNIRRVATAIGSINANLE-SPQLYSLAKSTSLQEPVRI 60

Query: 679 PGDAIHAVLTSIEDTGTDPAS 617
            GD++   ++S +   T   S
Sbjct: 61  YGDSVSPAISSSKAHSTSSVS 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,758,982
Number of Sequences: 5004
Number of extensions: 77237
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)