Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_P12
         (913 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    28   0.10 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   8.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   8.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 28.3 bits (60), Expect = 0.10
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -1

Query: 817  SLFWHQNQRTFQKCRKQLRPIDANGR*ACTVGGLYKQSSFSEPVRSPGDAIHAVLTS 647
            S+    NQ T  KC  + RP           G +   S  S+ V SPG+ + + +++
Sbjct: 868  SISHENNQPTMNKCSDRKRPASQATSVKAEPGSIMAMSESSKKVLSPGELLSSCVSN 924


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 858 HRGFPSSTPLTSMGVCFGTKINGLSKNVXN 769
           H+  P+S  L ++ +CF   + G  K   N
Sbjct: 174 HKRQPTSIDLNAVRLCFQVFLEGSQKRKFN 203


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 858 HRGFPSSTPLTSMGVCFGTKINGLSKNVXN 769
           H+  P+S  L ++ +CF   + G  K   N
Sbjct: 174 HKRQPTSIDLNAVRLCFQVFLEGSQKRKFN 203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 259,799
Number of Sequences: 438
Number of extensions: 6057
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)