Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_P04
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   136   4e-33
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   133   3e-32
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    40   3e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.4  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    28   1.9  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.8  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   7.7  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  136 bits (329), Expect = 4e-33
 Identities = 64/99 (64%), Positives = 76/99 (76%)
 Frame = -2

Query: 617 RLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLA 438
           RL++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLA
Sbjct: 122 RLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLA 181

Query: 437 REVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 321
           REVLR+RG L R   WDV+ DL+FYRDPEE E++E+  K
Sbjct: 182 REVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220



 Score = 81.0 bits (191), Expect = 2e-16
 Identities = 38/52 (73%), Positives = 41/52 (78%)
 Frame = -1

Query: 774 IEXPADVXVXSSRPFGQRAVLKFAAHTGATXIAGRFTPGAFTNQIQAAFREP 619
           IE PADV V S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REP
Sbjct: 70  IENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREP 121


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  133 bits (322), Expect = 3e-32
 Identities = 63/97 (64%), Positives = 75/97 (77%)
 Frame = -2

Query: 617 RLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLA 438
           RL+IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLA
Sbjct: 123 RLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLA 182

Query: 437 REVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 327
           REVLRLRG + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 183 REVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219



 Score = 85.4 bits (202), Expect = 9e-18
 Identities = 40/52 (76%), Positives = 42/52 (80%)
 Frame = -1

Query: 774 IEXPADVXVXSSRPFGQRAVLKFAAHTGATXIAGRFTPGAFTNQIQAAFREP 619
           IE PADV V SSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I   +REP
Sbjct: 71  IENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREP 122


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 23/74 (31%), Positives = 37/74 (50%)
 Frame = -2

Query: 656 LLLTRSKLHSVNLRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 477
           L+ T  K   V   L+++L+P ++     EA   ++P I + +TD+  R V   IP N  
Sbjct: 168 LIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDD 227

Query: 476 SSHSIGLMWWLLAR 435
           S     L+  LL+R
Sbjct: 228 SLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 572 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 462
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +1

Query: 376 STTTSQRWSRGSTPRSLNTSRANSHHIKPIEWE 474
           S   S RW  G+T  S     A+S  I PIEWE
Sbjct: 439 SNNISVRWFLGAT--SAQNRNASSEAILPIEWE 469


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 464 IGLMWWLLAREVLRLRGVLPRDQRWD 387
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 409 FPVTSAGML--WLICSSTVTLKKVKRM 335
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,296
Number of Sequences: 5004
Number of extensions: 60664
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)