Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_P02
         (899 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   5.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.8  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 700 TSSAYIDLPPYTPTAHLRQWGGVVTTF 780
           TS     LPP + T  +  W GV  TF
Sbjct: 288 TSGINASLPPVSYTKAIDIWTGVCLTF 314


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 700 TSSAYIDLPPYTPTAHLRQWGGVVTTF 780
           TS     LPP + T  +  W GV  TF
Sbjct: 288 TSGINASLPPVSYTKAIDIWTGVCLTF 314


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 816 GVCLAPKSTDFPKCRNNSAPLTQMGGRRVRW 724
           G+C  P+S D P   + S+P  + G  R+ +
Sbjct: 119 GLCEVPESRDGPPSVSLSSPPREPGTPRINF 149


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/39 (23%), Positives = 16/39 (41%)
 Frame = +3

Query: 615 SGGWIGPGVFYGGQNSVDGVSRRSDGSLNELCLYRPPTV 731
           SG      +  G  N     SR +  +   +  ++PPT+
Sbjct: 601 SGSGSAENLSSGSNNQTSSASRENTSNTTSMESFKPPTL 639


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,638
Number of Sequences: 438
Number of extensions: 5870
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)