Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_O05
         (837 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    26   0.50 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.6  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   6.1  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 375 SHLHDS*GAHQSHSAPPPHRTLVP 446
           SH+H +   H SH+A P H+   P
Sbjct: 424 SHIHATPHHHHSHAATPHHQHSTP 447


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
 Frame = +2

Query: 374 LSSPRLVRGAPEPQRTTTPQDLSAEHRAPPHP---AIDGPCRSRVGAFCPHHPLRL 532
           L+SP    G P    TT P ++       P+P        C + +    P HP+R+
Sbjct: 389 LASPLKREGGPPTGATTGPNEIVTCTNCGPNPCTHTTTNGCTAELRKKEPPHPIRV 444


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 398 GAPEPQRTTTPQDLSAEHRAPPHPAIDGPCRSRVGAFCPHHPLRL 532
           GAP PQ +      + +  +PP+P+   P     GA    +P ++
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQM 63


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 269 ERRPRYRHVRAIGPPSPAP 325
           E+ PR+R    IGPP+P P
Sbjct: 143 EQVPRFR---CIGPPTPFP 158


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,062
Number of Sequences: 438
Number of extensions: 5934
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)