Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_N06
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...   202   5e-53
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    32   0.11 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   1.1  
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    28   1.4  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    27   2.4  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    27   4.3  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    26   5.6  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    26   7.4  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    25   9.8  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   9.8  

>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score =  202 bits (493), Expect = 5e-53
 Identities = 85/148 (57%), Positives = 118/148 (79%)
 Frame = -1

Query: 697 YETTKTRLIFVE*SNXLEGXLIAHKRIFIKDSAVNAVCYGAKVLLPGILRYEDGIEVDQE 518
           Y+ T+           LE  L+ +KRI +KDSAVNA+CYGAK+++PG+LRYE GIEV++E
Sbjct: 248 YDNTRDESYLRRVIRPLESLLVGYKRIVVKDSAVNAICYGAKLMIPGLLRYEAGIEVNEE 307

Query: 517 IVIVTTKGEAVALAVALMTTSTMASCDHGVAAKLKRVIMERDTYPRKWGLGPKASQKKIL 338
           IV++TTKGEA+A+ +A M+T  +++CDHGV AK+KR IMERD YPR+WGLGP++ +KK L
Sbjct: 308 IVLITTKGEAIAVGIAQMSTVELSTCDHGVVAKVKRCIMERDVYPRRWGLGPQSMKKKTL 367

Query: 337 IQQGKLDKYGKPNENTPKEWLNSYVNYN 254
            ++GKLDKYG+PNENTP +W  SY++Y+
Sbjct: 368 KKEGKLDKYGRPNENTPADWSKSYIDYS 395



 Score = 55.6 bits (128), Expect = 8e-09
 Identities = 28/56 (50%), Positives = 33/56 (58%)
 Frame = -3

Query: 818 LGLXXGXGGQMIELRRVGPAFRARRKACSRCTDILDAQWFV*NHKDETYLRRVIKP 651
           LGL  G GG M ELRRV     +         D+LDAQW   N +DE+YLRRVI+P
Sbjct: 208 LGLLLGVGGHMQELRRVRSGCLSENDDIVTMHDVLDAQWIYDNTRDESYLRRVIRP 263


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
 Frame = -1

Query: 325 KLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEGSRKRTASTANAEDPDVSIEVKQ 146
           K D      E++ +E  +S  + + ++E E+ +   E  +K+  + A +ED +   E  +
Sbjct: 32  KQDDSSSEEESSEEESASSSESESSEEESESEESEVEVPKKK--AVAASEDSESDSESSE 89

Query: 145 EXXXXXXKRDSEAPAEADATMDT---SESPETAEQPADDSVR 29
           E      + DSE   E+++  ++   SE    +E+ +D+S R
Sbjct: 90  EEEETESEEDSEVSDESESESESESESEEESESEEESDESER 131


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = -1

Query: 238 ENGDGVEEGSRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPET 59
           E  + VE+   K+  S+ ++ D + S +   E        DSE+ + ++        P +
Sbjct: 186 EEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPAS 245

Query: 58  AEQPA 44
            E+PA
Sbjct: 246 EERPA 250


>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = -1

Query: 337 IQQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEGSRK 203
           I QG+LD + KP  ++PK+ +++    + K++ ++  G E   ++
Sbjct: 336 IPQGRLDSFFKPVPSSPKKPVDTKSKGSAKRKRDSNKGGESKKKR 380


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 289 PKEWLNSYVNYNVKKEPENGDGVEEGSRKRTASTANAEDPDVSIEVKQ 146
           PK + N+    N+KK   +GD     +  R A+ A+A D +V    KQ
Sbjct: 275 PKAFFNTDDEDNMKKSSSHGDSEVVEASDRYANQADAADAEVDNIEKQ 322


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +3

Query: 393 SRSIMTRLSFAATP*SH-EAIVDVVIRATANATASPLVVTITISWSTSMPS--SYLKIPG 563
           S   +T +S  +T  ++  + VD+    TA++T        T+S+ST +P+  S L  P 
Sbjct: 213 SSETLTSVSITSTESAYTSSSVDIAASTTASSTLPVSTSEATVSFSTDIPATPSTLSSPA 272

Query: 564 NS 569
           +S
Sbjct: 273 SS 274


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
 Frame = -1

Query: 322 LDKYGKP--NENTPKEWLNSYVNYNV-------KKEPENGDGVEEGSRKRTASTANAEDP 170
           +D+YG+P   +   KE    Y   N          E  + + V   S K T S    ++ 
Sbjct: 65  VDRYGRPLNQDKATKEIDRLYELENEGSSSSSESSEITDNEEVASASSKSTKSEELTDEE 124

Query: 169 DVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPETAE 53
               EV            SE+  E+DA  +T   PE +E
Sbjct: 125 SEDEEVYDPARGEGIISTSESSDESDAESETEAQPEISE 163


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = -1

Query: 247 KEPENGDGVEEGSRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADA----TMD 80
           KE E  DG+++ S + +    + E P+              ++++EA  E  A      +
Sbjct: 282 KESETIDGIDDKSLRSSTREVSVESPNEDSVNDDSSSDVSDEKETEAKHEIRAPAIIVRE 341

Query: 79  TSESPETAEQPADDS 35
           TS  P TA    +D+
Sbjct: 342 TSSHPSTAVPSENDT 356


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 274 NSYVNYNVKKEPENGDGVEEGSRKRTASTANAEDPDV 164
           N YV+ N   E  +GD + E  R R +     ++ D+
Sbjct: 3   NEYVDMNSSSEDSDGDSILEEGRLRPSFRGQQKERDM 39


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -1

Query: 400 ERDTYPRKWGLGPKAS--QKKILIQQGKLDKYGKPNENTPKEWLNSYV 263
           +R  + +   LG K S    +ILI+Q     + +  E T  +W N+YV
Sbjct: 540 DRPRHKKNPELGNKKSIFANEILIEQADAQSFKQDEEVTLMDWGNAYV 587


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,948,502
Number of Sequences: 5004
Number of extensions: 57895
Number of successful extensions: 173
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)