Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_M16
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.65 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    24   2.0  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    24   2.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.0  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 555 PXPPXPPPPXAPPXXXXLXXLP 620
           P PP PPPP  PP       LP
Sbjct: 236 PAPPPPPPPTLPPQSTNTSQLP 257



 Score = 23.0 bits (47), Expect(2) = 3.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 555 PXPPXPPPP 581
           P PP PPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 22.2 bits (45), Expect(2) = 3.3
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +3

Query: 561 PPXPPPPXAPPXXXXLXXLPXXXXGPGXXASP 656
           PP PPPP A          P      G   SP
Sbjct: 190 PPPPPPPPAVEDQAADANEPDDYYSSGRAVSP 221


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.2 bits (50), Expect(2) = 2.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 549 AXPXPPXPPPP 581
           A P PP PPPP
Sbjct: 773 AGPPPPPPPPP 783



 Score = 21.8 bits (44), Expect(2) = 2.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 561 PPXPPPPXA 587
           PP PPPP A
Sbjct: 776 PPPPPPPPA 784


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 23.8 bits (49), Expect(2) = 2.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 543  PRAXPXPPXPPP 578
            P A P PP PPP
Sbjct: 1091 PSAVPPPPPPPP 1102



 Score = 21.8 bits (44), Expect(2) = 2.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 561  PPXPPPPXA 587
            PP PPPP A
Sbjct: 1095 PPPPPPPPA 1103


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = +3

Query: 561  PPXPPPPXAPPXXXXLXXLPXXXXGPGXXASPXPLXVXXLTPL 689
            PP PPP  APP       +P     P   A P P     L P+
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVP--PPSTAPPVPTPSAGLPPV 1229



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +3

Query: 561  PPXPPPPXAPPXXXXLXXLPXXXXGPGXXASPXP 662
            PP PPP  APP       LP     P   A P P
Sbjct: 1208 PPVPPPSTAPPVPTPSAGLPPVPV-PTAKAPPVP 1240


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 543 PRAXPXPPXPPPPXAPP 593
           P   P PP PPP   PP
Sbjct: 5   PPGNPPPPPPPPGFEPP 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,374,335
Number of Sequences: 5004
Number of extensions: 14789
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)