Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_M04
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   165   3e-41
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   163   2e-40
06_03_0543 + 21967787-21970261                                         29   5.6  
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281     28   9.8  
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789...    28   9.8  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  165 bits (402), Expect = 3e-41
 Identities = 72/124 (58%), Positives = 94/124 (75%)
 Frame = -2

Query: 686 YAYCGRFTPGAFTNQIQAAFREPRXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRF 507
           +A  GR TPG FTNQ+Q +F EPR LI+ DP  DHQPI E++  NIP IA C+TDSP+R+
Sbjct: 101 HAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRY 160

Query: 506 VDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 327
           VDI IP N K  +SIG ++WLLAR VL++RG +    +WDV+VDLFFYRDPEE+++ E++
Sbjct: 161 VDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220

Query: 326 AKEQ 315
           A  Q
Sbjct: 221 APAQ 224



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 777 VXIENPXXVXVISSRPFGQR 718
           V IENP  + V S+RP+GQR
Sbjct: 70  VAIENPQDIIVQSARPYGQR 89


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  163 bits (395), Expect = 2e-40
 Identities = 70/120 (58%), Positives = 91/120 (75%)
 Frame = -2

Query: 686 YAYCGRFTPGAFTNQIQAAFREPRXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRF 507
           +A  GR TPG FTNQ+Q +F EPR LI+ DP  DHQPI E++  NIP IA C+TDSP+R+
Sbjct: 101 HAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRY 160

Query: 506 VDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 327
           VDI IP N K   SIG ++WLLAR VL++RG +    +WDV+VDLFFYRDPEE+++ E++
Sbjct: 161 VDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 777 VXIENPXXVXVISSRPFGQR 718
           V IENP  + V S+RP+GQR
Sbjct: 70  VAIENPQDIIVQSARPYGQR 89


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 458 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 369
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
          Length = 518

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 21/90 (23%), Positives = 37/90 (41%)
 Frame = +1

Query: 370 NKSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLHKAITG 549
           N  + T       S+  + ST+ +N+     +   +   +  A S + S       +  G
Sbjct: 373 NSGSGTMSGIDAPSSTGTSSTAESNSGSATSVTGANSGSYSSAWSNSNSNSGSTMPSGIG 432

Query: 550 MLTYEASVMG*WSCAGSNTIKXRGSRNAAW 639
           + +   S  G WS AGSNT    G+ ++ W
Sbjct: 433 VASNAGSSSGSWSNAGSNTGTLSGAGSSNW 462


>01_07_0027 -
           40578075-40578437,40578647-40578767,40578852-40578952,
           40579176-40579451,40579485-40579805,40581609-40581623,
           40581969-40582295,40583287-40583538
          Length = 591

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 357 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 473
           V  + Q   NIP LVT   TTK + F    PPH    +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,543,622
Number of Sequences: 37544
Number of extensions: 386766
Number of successful extensions: 959
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)