Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_M03
         (817 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0302 - 2286171-2286341,2286747-2286968                           29   4.4  
04_02_0026 + 8708765-8710935,8711021-8711272,8711353-8711463,871...    29   4.4  
12_02_1174 - 26696869-26698191                                         29   5.8  
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238...    29   5.8  
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    29   5.8  
01_05_0014 - 17162664-17163500                                         28   7.7  

>12_01_0302 - 2286171-2286341,2286747-2286968
          Length = 130

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 82  RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 183
           RL+R RK +  D+   G  + +GEKLE  + +E+
Sbjct: 57  RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90


>04_02_0026 +
           8708765-8710935,8711021-8711272,8711353-8711463,
           8711553-8711634,8711909-8712100
          Length = 935

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = -3

Query: 662 PDSXHQP-PPXLTSISINPXTPX*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYF 486
           P   HQP PP L S    P  P     +P  +PPL +  P      S        +PP  
Sbjct: 490 PSPRHQPSPPPLRSPPRQPTPPP----SPSQQPPLPAPQPVQASPTSPAKQHAPPAPPSV 545

Query: 485 QVNDESQASRLISR 444
           Q +  +  S L+ +
Sbjct: 546 QTSPPTPQSALVEQ 559


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/70 (30%), Positives = 25/70 (35%)
 Frame = -3

Query: 701 PXXXXXXQPDHQIPDSXHQPPPXLTSISINPXTPX*KEFAPGLKPPLSSEAPSAYLTPSS 522
           P      +P H+ P    QPPP L      P  P      P +KPP+    P     P S
Sbjct: 129 PRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPP-PPRPPSVKPPVVQPKPQ---PPPS 184

Query: 521 LGMXKGVSPP 492
           L       PP
Sbjct: 185 LQPPSPPPPP 194


>09_04_0737 -
           19822822-19822973,19823069-19823135,19823666-19823822,
           19824003-19824177,19824364-19824481,19824676-19824874,
           19824983-19825062,19825141-19825257,19825791-19825961,
           19826121-19826597
          Length = 570

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +2

Query: 74  FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 220
           F+VD  G G +  ++++LAV+ G R      CR     VV     DVVV
Sbjct: 93  FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140


>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
            30560292-30560346,30560537-30560613,30561228-30561315,
            30561490-30561593,30562050-30562231,30562347-30563109,
            30563195-30563438,30564513-30564658,30565158-30565283,
            30565404-30565517,30565595-30565762,30566283-30566528,
            30566605-30566767,30566970-30567064,30567274-30567357,
            30567769-30568055,30568359-30568572,30568923-30569140,
            30569386-30569623,30570312-30571118,30571202-30571301,
            30571694-30571737,30571824-30571973
          Length = 1942

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -1

Query: 241  PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 62
            P F T+LY     ++KD      S+     L S+  Y  L+DP   S D+    + +   
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407

Query: 61   ILHSF 47
            +LHSF
Sbjct: 1408 LLHSF 1412


>01_05_0014 - 17162664-17163500
          Length = 278

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
 Frame = -3

Query: 680 QPDHQIPDSXH-QPPPXLTSISINPXTPX*--KEFAPG--LKPPLSSEAPSAYLTPSSLG 516
           QP   +P S     PP  + +  NP  P    +  +P   +K  +  ++P+   TP  LG
Sbjct: 47  QPLATVPGSLQIWSPPASSLVRPNPPRPHSAARSLSPRHVIKTKIRGDSPARQPTPGELG 106

Query: 515 MXKGVSPP 492
           + K   PP
Sbjct: 107 LLKAAPPP 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,186,132
Number of Sequences: 37544
Number of extensions: 374751
Number of successful extensions: 1088
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)