Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_M03
         (817 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X70944-1|CAA50283.1|  707|Homo sapiens PTB-associated splicing f...    32   2.2  
BC051192-1|AAH51192.1|  707|Homo sapiens splicing factor proline...    32   2.2  
BC027708-1|AAH27708.1|  525|Homo sapiens SFPQ protein protein.         32   2.2  
BC004534-1|AAH04534.2|  634|Homo sapiens SFPQ protein protein.         32   2.2  
AL590434-2|CAI12467.1|  707|Homo sapiens splicing factor proline...    32   2.2  
AF492646-1|AAO85488.1|  546|Homo sapiens proline rich, vinculin ...    30   8.7  
AF070530-1|AAC28630.1|  416|Homo sapiens unknown protein.              30   8.7  
AB097023-1|BAC77376.1|  712|Homo sapiens putative NFkB activatin...    30   8.7  
AB093555-1|BAC44839.1|  712|Homo sapiens TIR domain containing a...    30   8.7  
AB086380-1|BAC55579.1|  712|Homo sapiens TICAM-1 protein.              30   8.7  

>X70944-1|CAA50283.1|  707|Homo sapiens PTB-associated splicing
           factor protein.
          Length = 707

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 24/63 (38%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = -3

Query: 677 PDHQIPDSXHQPPPXLTSISINPXTPX*KEFAPGL--KPPLSSEAPSAYLTPSSLGMXKG 504
           P H  P    QPPP     S  P        APG+   PP SS AP A  TP + G   G
Sbjct: 88  PPHPQPHQQQQPPPP-PQDSSKPVVAQGPGPAPGVGSAPPASSSAPPA--TPPTSGAPPG 144

Query: 503 VSP 495
             P
Sbjct: 145 SGP 147


>BC051192-1|AAH51192.1|  707|Homo sapiens splicing factor
           proline/glutamine-rich (polypyrimidine tract binding
           protein as protein.
          Length = 707

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 24/63 (38%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = -3

Query: 677 PDHQIPDSXHQPPPXLTSISINPXTPX*KEFAPGL--KPPLSSEAPSAYLTPSSLGMXKG 504
           P H  P    QPPP     S  P        APG+   PP SS AP A  TP + G   G
Sbjct: 88  PPHPQPHQQQQPPPP-PQDSSKPVVAQGPGPAPGVGSTPPASSSAPPA--TPPTSGAPPG 144

Query: 503 VSP 495
             P
Sbjct: 145 SGP 147


>BC027708-1|AAH27708.1|  525|Homo sapiens SFPQ protein protein.
          Length = 525

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 24/63 (38%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = -3

Query: 677 PDHQIPDSXHQPPPXLTSISINPXTPX*KEFAPGL--KPPLSSEAPSAYLTPSSLGMXKG 504
           P H  P    QPPP     S  P        APG+   PP SS AP A  TP + G   G
Sbjct: 88  PPHPQPHQQQQPPPP-PQDSSKPVVAQGPGPAPGVGSAPPASSSAPPA--TPPTSGAPPG 144

Query: 503 VSP 495
             P
Sbjct: 145 SGP 147


>BC004534-1|AAH04534.2|  634|Homo sapiens SFPQ protein protein.
          Length = 634

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 24/63 (38%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = -3

Query: 677 PDHQIPDSXHQPPPXLTSISINPXTPX*KEFAPGL--KPPLSSEAPSAYLTPSSLGMXKG 504
           P H  P    QPPP     S  P        APG+   PP SS AP A  TP + G   G
Sbjct: 15  PPHPQPHQQQQPPPP-PQDSSKPVVAQGPGPAPGVGSAPPASSSAPPA--TPPTSGAPPG 71

Query: 503 VSP 495
             P
Sbjct: 72  SGP 74


>AL590434-2|CAI12467.1|  707|Homo sapiens splicing factor
           proline/glutamine-rich (polypyrimidine tract binding
           protein as protein.
          Length = 707

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 24/63 (38%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = -3

Query: 677 PDHQIPDSXHQPPPXLTSISINPXTPX*KEFAPGL--KPPLSSEAPSAYLTPSSLGMXKG 504
           P H  P    QPPP     S  P        APG+   PP SS AP A  TP + G   G
Sbjct: 88  PPHPQPHQQQQPPPP-PQDSSKPVVAQGPGPAPGVGSAPPASSSAPPA--TPPTSGAPPG 144

Query: 503 VSP 495
             P
Sbjct: 145 SGP 147


>AF492646-1|AAO85488.1|  546|Homo sapiens proline rich, vinculin and
           TIR domain containing protein-B protein.
          Length = 546

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 611 PXTPX*KEFAPGLKPPLSSEAP-SAYLTPSSL 519
           P TP   E +P   PP  S  P SA+LTPSSL
Sbjct: 211 PPTPTTPETSPPPPPPPPSSTPCSAHLTPSSL 242


>AF070530-1|AAC28630.1|  416|Homo sapiens unknown protein.
          Length = 416

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 611 PXTPX*KEFAPGLKPPLSSEAP-SAYLTPSSL 519
           P TP   E +P   PP  S  P SA+LTPSSL
Sbjct: 54  PPTPTTPETSPPPPPPPPSSTPCSAHLTPSSL 85


>AB097023-1|BAC77376.1|  712|Homo sapiens putative NFkB activating
           protein protein.
          Length = 712

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 611 PXTPX*KEFAPGLKPPLSSEAP-SAYLTPSSL 519
           P TP   E +P   PP  S  P SA+LTPSSL
Sbjct: 350 PPTPTTPETSPPPPPPPPSSTPCSAHLTPSSL 381


>AB093555-1|BAC44839.1|  712|Homo sapiens TIR domain containing
           adaptor inducing interferon-beta protein.
          Length = 712

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 611 PXTPX*KEFAPGLKPPLSSEAP-SAYLTPSSL 519
           P TP   E +P   PP  S  P SA+LTPSSL
Sbjct: 350 PPTPTTPETSPPPPPPPPSSTPCSAHLTPSSL 381


>AB086380-1|BAC55579.1|  712|Homo sapiens TICAM-1 protein.
          Length = 712

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 611 PXTPX*KEFAPGLKPPLSSEAP-SAYLTPSSL 519
           P TP   E +P   PP  S  P SA+LTPSSL
Sbjct: 350 PPTPTTPETSPPPPPPPPSSTPCSAHLTPSSL 381


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,616,745
Number of Sequences: 237096
Number of extensions: 1895574
Number of successful extensions: 4687
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4676
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10147868276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)