Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_T7_M02
(799 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y08415-1|CAA69692.1| 502|Homo sapiens nicotinic acetylcholine r... 33 1.6
X53179-1|CAA37320.1| 502|Homo sapiens precursor peptide (AA -25... 33 1.6
U62437-1|AAB40115.1| 502|Homo sapiens nicotinic acetylcholine r... 33 1.6
BC075041-1|AAH75041.1| 502|Homo sapiens cholinergic receptor, n... 33 1.6
BC075040-1|AAH75040.1| 502|Homo sapiens cholinergic receptor, n... 33 1.6
AL592078-3|CAI16184.1| 502|Homo sapiens cholinergic receptor, n... 33 1.6
AJ001935-1|CAA05108.1| 504|Homo sapiens CHRNB2 protein. 33 1.6
AF077186-1|AAD45422.1| 502|Homo sapiens neuronal nicotinic acet... 33 1.6
L08485-1|AAA58490.1| 462|Homo sapiens GABA-benzodiazepine recep... 31 4.8
BT009830-1|AAP88832.1| 462|Homo sapiens gamma-aminobutyric acid... 31 4.8
BC113422-1|AAI13423.1| 462|Homo sapiens gamma-aminobutyric acid... 31 4.8
BC111979-1|AAI11980.1| 462|Homo sapiens gamma-aminobutyric acid... 31 4.8
>Y08415-1|CAA69692.1| 502|Homo sapiens nicotinic acetylcholine
receptor beta2 subunit precursor protein.
Length = 502
Score = 32.7 bits (71), Expect = 1.6
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -2
Query: 765 MQLDNWPNDMXTCTFKFGXRMHNSDEMDFVIDKRIYSMFE---SGAWXVTAL 619
+++ ++P D CT KF ++ E+D V+ + S+ + SG W + AL
Sbjct: 157 IEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSEVASLDDFTPSGEWDIVAL 208
>X53179-1|CAA37320.1| 502|Homo sapiens precursor peptide (AA -25 to
477) protein.
Length = 502
Score = 32.7 bits (71), Expect = 1.6
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -2
Query: 765 MQLDNWPNDMXTCTFKFGXRMHNSDEMDFVIDKRIYSMFE---SGAWXVTAL 619
+++ ++P D CT KF ++ E+D V+ + S+ + SG W + AL
Sbjct: 157 IEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSEVASLDDFTPSGEWDIVAL 208
>U62437-1|AAB40115.1| 502|Homo sapiens nicotinic acetylcholine
receptor beta2 subunit precursor protein.
Length = 502
Score = 32.7 bits (71), Expect = 1.6
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -2
Query: 765 MQLDNWPNDMXTCTFKFGXRMHNSDEMDFVIDKRIYSMFE---SGAWXVTAL 619
+++ ++P D CT KF ++ E+D V+ + S+ + SG W + AL
Sbjct: 157 IEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSEVASLDDFTPSGEWDIVAL 208
>BC075041-1|AAH75041.1| 502|Homo sapiens cholinergic receptor,
nicotinic, beta 2 (neuronal) protein.
Length = 502
Score = 32.7 bits (71), Expect = 1.6
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -2
Query: 765 MQLDNWPNDMXTCTFKFGXRMHNSDEMDFVIDKRIYSMFE---SGAWXVTAL 619
+++ ++P D CT KF ++ E+D V+ + S+ + SG W + AL
Sbjct: 157 IEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSEVASLDDFTPSGEWDIVAL 208
>BC075040-1|AAH75040.1| 502|Homo sapiens cholinergic receptor,
nicotinic, beta 2 (neuronal) protein.
Length = 502
Score = 32.7 bits (71), Expect = 1.6
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -2
Query: 765 MQLDNWPNDMXTCTFKFGXRMHNSDEMDFVIDKRIYSMFE---SGAWXVTAL 619
+++ ++P D CT KF ++ E+D V+ + S+ + SG W + AL
Sbjct: 157 IEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSEVASLDDFTPSGEWDIVAL 208
>AL592078-3|CAI16184.1| 502|Homo sapiens cholinergic receptor,
nicotinic, beta 2 (neuronal) protein.
Length = 502
Score = 32.7 bits (71), Expect = 1.6
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -2
Query: 765 MQLDNWPNDMXTCTFKFGXRMHNSDEMDFVIDKRIYSMFE---SGAWXVTAL 619
+++ ++P D CT KF ++ E+D V+ + S+ + SG W + AL
Sbjct: 157 IEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSEVASLDDFTPSGEWDIVAL 208
>AJ001935-1|CAA05108.1| 504|Homo sapiens CHRNB2 protein.
Length = 504
Score = 32.7 bits (71), Expect = 1.6
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -2
Query: 765 MQLDNWPNDMXTCTFKFGXRMHNSDEMDFVIDKRIYSMFE---SGAWXVTAL 619
+++ ++P D CT KF ++ E+D V+ + S+ + SG W + AL
Sbjct: 157 IEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSEVASLDDFTPSGEWDIVAL 208
>AF077186-1|AAD45422.1| 502|Homo sapiens neuronal nicotinic
acetylcholine receptor beta 2 protein.
Length = 502
Score = 32.7 bits (71), Expect = 1.6
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -2
Query: 765 MQLDNWPNDMXTCTFKFGXRMHNSDEMDFVIDKRIYSMFE---SGAWXVTAL 619
+++ ++P D CT KF ++ E+D V+ + S+ + SG W + AL
Sbjct: 157 IEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSEVASLDDFTPSGEWDIVAL 208
>L08485-1|AAA58490.1| 462|Homo sapiens GABA-benzodiazepine receptor
alpha-5-subunit protein.
Length = 462
Score = 31.1 bits (67), Expect = 4.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 789 LDISTPIXMQLDNWPNDMXTCTFKFGXRMHNSDEMDFV 676
L IS MQL+++P D C KFG + + E+ +V
Sbjct: 167 LTISAECPMQLEDFPMDAHACPLKFGSYAYPNSEVVYV 204
>BT009830-1|AAP88832.1| 462|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, alpha 5 protein.
Length = 462
Score = 31.1 bits (67), Expect = 4.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 789 LDISTPIXMQLDNWPNDMXTCTFKFGXRMHNSDEMDFV 676
L IS MQL+++P D C KFG + + E+ +V
Sbjct: 167 LTISAECPMQLEDFPMDAHACPLKFGSYAYPNSEVVYV 204
>BC113422-1|AAI13423.1| 462|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, alpha 5 protein.
Length = 462
Score = 31.1 bits (67), Expect = 4.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 789 LDISTPIXMQLDNWPNDMXTCTFKFGXRMHNSDEMDFV 676
L IS MQL+++P D C KFG + + E+ +V
Sbjct: 167 LTISAECPMQLEDFPMDAHACPLKFGSYAYPNSEVVYV 204
>BC111979-1|AAI11980.1| 462|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, alpha 5, precursor protein.
Length = 462
Score = 31.1 bits (67), Expect = 4.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 789 LDISTPIXMQLDNWPNDMXTCTFKFGXRMHNSDEMDFV 676
L IS MQL+++P D C KFG + + E+ +V
Sbjct: 167 LTISAECPMQLEDFPMDAHACPLKFGSYAYPNSEVVYV 204
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,792,169
Number of Sequences: 237096
Number of extensions: 1174869
Number of successful extensions: 3255
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3255
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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