Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_M02
         (799 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64843-16|AAX55689.1|  442|Caenorhabditis elegans Modulation of ...    30   2.2  
U64843-15|AAF98227.2|  489|Caenorhabditis elegans Modulation of ...    30   2.2  
U64843-14|AAM45353.1|  475|Caenorhabditis elegans Modulation of ...    30   2.2  
AF303088-1|AAG36975.1|  489|Caenorhabditis elegans serotonin-gat...    30   2.2  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    28   8.9  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    28   8.9  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    28   8.9  

>U64843-16|AAX55689.1|  442|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform c protein.
          Length = 442

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 789 LDISTPIXMQLDNWPNDMXTCTFKFGXRMHNSDEMD 682
           L + +P  + L  +P D  TC   F    HNS+E++
Sbjct: 153 LSVKSPCNLDLRQFPFDTQTCILIFESYSHNSEEVE 188


>U64843-15|AAF98227.2|  489|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform a protein.
          Length = 489

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 789 LDISTPIXMQLDNWPNDMXTCTFKFGXRMHNSDEMD 682
           L + +P  + L  +P D  TC   F    HNS+E++
Sbjct: 153 LSVKSPCNLDLRQFPFDTQTCILIFESYSHNSEEVE 188


>U64843-14|AAM45353.1|  475|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform b protein.
          Length = 475

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 789 LDISTPIXMQLDNWPNDMXTCTFKFGXRMHNSDEMD 682
           L + +P  + L  +P D  TC   F    HNS+E++
Sbjct: 153 LSVKSPCNLDLRQFPFDTQTCILIFESYSHNSEEVE 188


>AF303088-1|AAG36975.1|  489|Caenorhabditis elegans serotonin-gated
           chloride channel protein.
          Length = 489

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 789 LDISTPIXMQLDNWPNDMXTCTFKFGXRMHNSDEMD 682
           L + +P  + L  +P D  TC   F    HNS+E++
Sbjct: 153 LSVKSPCNLDLRQFPFDTQTCILIFESYSHNSEEVE 188


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +3

Query: 543  VSGKTSGTLPRELPPRHGPGSAPHWTEPSHXTLLTRTYCIFFCQSRNP 686
            ++   SG  P  +P  H   S PH          T T  I  CQ+RNP
Sbjct: 867  INASESGDEPVPIPI-HSDDSQPHHYNSIQVYSTTATKRILLCQARNP 913


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +3

Query: 543  VSGKTSGTLPRELPPRHGPGSAPHWTEPSHXTLLTRTYCIFFCQSRNP 686
            ++   SG  P  +P  H   S PH          T T  I  CQ+RNP
Sbjct: 930  INASESGDEPVPIPI-HSDDSQPHHYNSIQVYSTTATKRILLCQARNP 976


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +3

Query: 543  VSGKTSGTLPRELPPRHGPGSAPHWTEPSHXTLLTRTYCIFFCQSRNP 686
            ++   SG  P  +P  H   S PH          T T  I  CQ+RNP
Sbjct: 930  INASESGDEPVPIPI-HSDDSQPHHYNSIQVYSTTATKRILLCQARNP 976


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,006,169
Number of Sequences: 27780
Number of extensions: 180296
Number of successful extensions: 470
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)