Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_M02
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    33   0.003
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.35 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   1.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.6  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 753 NWPNDMXTCTFKFGXRMHNSDEMDFVIDKRIYSM 652
           +WP D   C   FG  +H+ +E++  +DK+ + M
Sbjct: 175 SWPYDTHRCRINFGSWVHSGEEVNIFLDKKGFHM 208


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = -2

Query: 750 WPNDMXTCTFKFGXRMHNSDEMDFVI--DKRIYSM---FESGAWXV 628
           +P D  TC  KFG    N D++   +  +K    +   ++SG W +
Sbjct: 158 FPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGTWDI 203


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 313 SLISNLSNTCDLTPLPEWSCEQSAWWGACGRVL 215
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 789 LDISTPIXMQLDNWPNDMXTCTFKFG 712
           L I     M L+N+P D   C  +FG
Sbjct: 124 LTIKAGCPMNLENFPMDTQRCPLQFG 149


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 750 WPNDMXTCTFKFGXRMHNSDEM 685
           WP D+  CT       H S+E+
Sbjct: 166 WPYDILNCTIHIASWSHGSNEI 187


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 620 CPVRCRARTVARWKLAWQCS 561
           C VRC A +  RW   W+ S
Sbjct: 19  CSVRCSAASGLRWFEIWRDS 38


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 750 WPNDMXTCTFKFGXRMHNSDEMDFVID 670
           +P+D   C  +     H +DEM F  D
Sbjct: 170 YPHDTQECKLQMESLSHTTDEMIFQWD 196


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 765 MQLDNWPNDMXTCTFKFGXRMHNSDEMD 682
           + ++ +P D  TC  KFG   ++  ++D
Sbjct: 151 IDVEYFPFDEQTCVMKFGSWTYDGFQVD 178


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 765 MQLDNWPNDMXTCTFKFGXRMHNSDEMD 682
           + ++ +P D  TC  KFG   ++  ++D
Sbjct: 155 IDVEYFPFDEQTCVLKFGSWTYDGFKVD 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,475
Number of Sequences: 438
Number of extensions: 1999
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)