Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_M01
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    29   0.58 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.0  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   5.4  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -1

Query: 337 RAPPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 239
           R+PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 99  RSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 675  PXPXXLXSXPPVEXXXSPPXVPXPXASXPVP 767
            P P      PP+    + P VP P ++ PVP
Sbjct: 1023 PVPLPSADAPPIPVPSTAPPVPIPTSTPPVP 1053



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
 Frame = +3

Query: 633  PXHXXXPXXPPXXXPX-PXXLXSXPPVEXXXSPPXVPXPXASXP 761
            P     P  PP   P  P      PPV    + P VP P A  P
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = +3

Query: 660  PPXXXPXPXXLXSXPPVEXXXSPPXVPXP-XASXPVP 767
            P    P P    + PPV      P VP P  A+ PVP
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVP 1153



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = +3

Query: 660  PPXXXPXPXXLXSXPPVEXXXSPPXVPXP-XASXPVP 767
            P    P P    + PPV      P VP P  A+ PVP
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172



 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = +3

Query: 675  PXPXXLXSXPPVEXXXSPPXVPXP-XASXPVP 767
            P P    + PPV      P VP P  A+ PVP
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVP 1134


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 352 VQXCRRAPPPPLRSLISNLSNTCDLTPLPEW 260
           VQ      P P+ S    ++N  +L PLPEW
Sbjct: 2   VQTAALHGPKPMDSSHIKVTNVKELKPLPEW 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,368,724
Number of Sequences: 5004
Number of extensions: 16053
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)