Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_M01
         (799 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    33   0.24 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    33   0.24 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    33   0.24 
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    32   0.55 
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    31   1.3  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +3

Query: 633 PXHXXXPXXPPXXXPXPXXLXSXPPVEXXXSPPXVPXPXASXP 761
           P     P  PP   P P      PP     SPP  P P  S P
Sbjct: 266 PPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPP 308


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +3

Query: 633 PXHXXXPXXPPXXXPXPXXLXSXPPVEXXXSPPXVPXPXASXP 761
           P     P  PP   P P      PP     SPP  P P  S P
Sbjct: 287 PPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPP 329


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +3

Query: 633 PXHXXXPXXPPXXXPXPXXLXSXPPVEXXXSPPXVPXPXASXP 761
           P     P  PP   P P      PP     SPP  P P  S P
Sbjct: 272 PPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPP 314


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 16/51 (31%), Positives = 19/51 (37%)
 Frame = +3

Query: 615 PXAXXXPXHXXXPXXPPXXXPXPXXLXSXPPVEXXXSPPXVPXPXASXPVP 767
           P A   P     P  PP   P P      PP+     PP +P P    P+P
Sbjct: 40  PCAAPMPMPMPMPVCPPPP-PCPAQFCPPPPICPPPPPPPMPCPPPPPPMP 89


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = +3

Query: 651 PXXPPXXXPXPXXLXSXPPVEXXXSPPXVPXPXASXPVP 767
           P  PP   P P    S  P +    PP  P P  + P P
Sbjct: 27  PPPPPPPKPAPYVEQSAQPQQTAPPPPPAPYPQQAVPAP 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,423,103
Number of Sequences: 27780
Number of extensions: 123206
Number of successful extensions: 420
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)