Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_T7_L17
(846 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 111 9e-26
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 106 5e-24
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 28 1.4
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 27 2.5
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.8
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 7.7
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 7.7
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 26 7.7
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 111 bits (268), Expect = 9e-26
Identities = 60/103 (58%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Frame = -3
Query: 844 DGTHVIXLX-VXGKNXXGXSXFCSXREPR*CFVISSRPFGQRAVLKFAAHTGXTXIAGRF 668
DG H+I L K + P VISSRP+G RAVLKFAAHTG T IAGRF
Sbjct: 47 DGIHIINLGKTWEKLVLAARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRF 106
Query: 667 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASCVNIPVIA 539
TPG FTN I +REPRL+IV DP D Q I EAS VNIPVIA
Sbjct: 107 TPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIA 149
Score = 98.3 bits (234), Expect = 1e-21
Identities = 44/72 (61%), Positives = 55/72 (76%)
Frame = -1
Query: 543 LLLCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFY 364
+ LC+TDS L VD+AIP N K SIGL W+LLAREVLRLRG + R W+V+ DL+FY
Sbjct: 148 IALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFY 207
Query: 363 RDPEESEKDEQQ 328
RDPEE E++E+Q
Sbjct: 208 RDPEEIEREEEQ 219
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 106 bits (254), Expect = 5e-24
Identities = 55/103 (53%), Positives = 64/103 (62%), Gaps = 1/103 (0%)
Frame = -3
Query: 844 DGTHVIXLX-VXGKNXXGXSXFCSXREPR*CFVISSRPFGQRAVLKFAAHTGXTXIAGRF 668
DG H++ L K + P V+S+R +G RAVLKFAAHTG T IAGRF
Sbjct: 46 DGVHILNLGKTWEKLVLAARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRF 105
Query: 667 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASCVNIPVIA 539
TPG FTN I +REPRL++V DP D Q I EAS VNIPVIA
Sbjct: 106 TPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIA 148
Score = 101 bits (242), Expect = 1e-22
Identities = 46/74 (62%), Positives = 56/74 (75%)
Frame = -1
Query: 543 LLLCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFY 364
+ LC+TDS L VDIAIP N K SIGL+W+LLAREVLR+RG L R WDV+ DL+FY
Sbjct: 147 IALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFY 206
Query: 363 RDPEESEKDEQQAK 322
RDPEE E++E+ K
Sbjct: 207 RDPEEVEREEEAKK 220
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +2
Query: 371 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 469
N+S+T +++ SR ST RS STS AN H K E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 543 LLLCNTDSPLRFVDIAIPCNTKSSHSI 463
L LC+ +S RF D+A+ NTK +H I
Sbjct: 85 LQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 465 IGLMWWLLAREVLRLRGVLPRDQRWD 388
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -2
Query: 410 FPVTSAGML--WLICSSTVTLKKVKRM 336
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 7.7
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +2
Query: 455 IKPIEWEDLVLHGIAMSTNLSGESVLHKSNHRNVD 559
++ IE E V+HG L+ +H+ H N++
Sbjct: 12 VRKIERERSVIHGALSMKRLTQNQTVHQQLHSNIE 46
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 631 FREPRLLIVLDPAQDHQPITEASCVNIPVIAFVQHRLPTKICGHCYP 491
FRE L + PA D T+AS V + + V +LP+ H P
Sbjct: 258 FRELLLESTIPPATDSAKTTDASLVMMGFPSKVVEQLPSLCACHSIP 304
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,327
Number of Sequences: 5004
Number of extensions: 57629
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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