Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_L15
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.84 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.84 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   0.89 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.8  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   7.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 15/50 (30%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
 Frame = +1

Query: 688 APPPPPP---XXXPXXLXXXTPPXLXXLXXXXPXXPLPXXPXPXXXPPXP 828
           +PPPPPP      P       PP    +    P  P P        PP P
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
 Frame = +1

Query: 661  SXPXSXXHXAPPPPPPXXXPXXLXXXTPPXLXXLXXXXPXXP--LPXXPXPXXXPP 822
            S P    H  PPPPPP      L   + P    +          +P  P P   PP
Sbjct: 897  SLPTIITHPTPPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPPPP 952


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.0 bits (52), Expect(2) = 0.89
 Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
 Frame = +1

Query: 688 APPPPPPXXXPXXLXXXT--PPXLXXLXXXXPXXPLPXXPXPXXXPPXP 828
           APPPPPP   P      +  P     +        +P  P     PP P
Sbjct: 237 APPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRP 285



 Score = 22.2 bits (45), Expect(2) = 0.89
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 661 SXPXSXXHXAPPPPPP 708
           S P       PPPPPP
Sbjct: 182 SLPSDYNPPPPPPPPP 197


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/62 (25%), Positives = 19/62 (30%)
 Frame = +1

Query: 643  PXPXXXSXPXSXXHXAPPPPPPXXXPXXLXXXTPPXLXXLXXXXPXXPLPXXPXPXXXPP 822
            P P   + P      APP P P   P      +           P   +P  P P   PP
Sbjct: 1025 PLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPP 1084

Query: 823  XP 828
             P
Sbjct: 1085 VP 1086



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/47 (27%), Positives = 16/47 (34%)
 Frame = +1

Query: 688  APPPPPPXXXPXXLXXXTPPXLXXLXXXXPXXPLPXXPXPXXXPPXP 828
            AP   PP   P  +     P +       P   +P  P P   PP P
Sbjct: 1078 APSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVP 1124


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/47 (29%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
 Frame = +1

Query: 691  PPPPPPXXXPXXLXXXTPPXLXXLXXXXP-XXPLPXXPXPXXXPPXP 828
            PP  P    P  +   TPP         P   P+P  P     PP P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 322 LRSLISNLSNTCDLTPLPEWSCEQSAW 242
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,136,853
Number of Sequences: 5004
Number of extensions: 13344
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)