Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_L06
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800     33   0.21 
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192           29   4.5  
09_06_0240 + 21797458-21799369,21799636-21799784                       29   4.5  
08_01_1038 + 10540185-10540709                                         29   4.5  
11_02_0104 + 8329231-8329902                                           29   6.0  
11_02_0093 - 8238947-8239615                                           29   6.0  
01_05_0698 + 24376193-24376708                                         28   7.9  

>09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800
          Length = 863

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -3

Query: 475 PESCCVKKSILSTFAGNNCTVDAA 404
           P SCCV+K I+S F   NCT D A
Sbjct: 53  PASCCVRKIIVSNFLPLNCTKDEA 76


>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
          Length = 283

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 445 LSTFAGNNCTVDAANPGCGPKI--GELYQKWNKPIAGVALGVACVEVVGALF 296
           LST AG  C +    P CGP+   G   Q+W       + G   VE++GALF
Sbjct: 111 LSTGAG--CAI-RPRPRCGPRARSGVAAQQWRHGRTVASEGRQSVELIGALF 159


>09_06_0240 + 21797458-21799369,21799636-21799784
          Length = 686

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 445 LSTFAGNNCTVDAANPGCGPKIGELYQKWNK 353
           ++    N+C  + A  G G KI E+ Q WN+
Sbjct: 622 IAVLVKNHCANETAQDGLGFKIDEIVQAWNE 652


>08_01_1038 + 10540185-10540709
          Length = 174

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = +2

Query: 392 AAGIRGVDRAVVAGEGREDALLDATGLGQRELAVVDSASVTAAFELSLQFREDSLGG 562
           + G+ G + AVV  EGR  +++   G   RE A + SASV  A   +   RED  GG
Sbjct: 104 SVGVVGEEAAVVRMEGRGGSVVADAG-SAREAAALASASVATA---AGSAREDDGGG 156


>11_02_0104 + 8329231-8329902
          Length = 223

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 308 YHLNTSNTESNAGYRLVPFLVELADLGTAAGIRGV 412
           +HLN S    N GY  V   +  AD GTAA   G+
Sbjct: 63  FHLNASKYSGN-GYSTVCLKLHTADSGTAAAAGGI 96


>11_02_0093 - 8238947-8239615
          Length = 222

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 308 YHLNTSNTESNAGYRLVPFLVELADLGTAAGIRGV 412
           +HLN S    N GY  V   +  AD GTAA   G+
Sbjct: 63  FHLNASKYSGN-GYSTVCLKLHAADSGTAAAAGGI 96


>01_05_0698 + 24376193-24376708
          Length = 171

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 352 PIAGVALGVACVEVVGALFALCLANSIRN 266
           P+AGV +  A V  V ALF  CLA  +R+
Sbjct: 126 PVAGVLVMGADVAGVSALFGFCLAEYLRH 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,809,777
Number of Sequences: 37544
Number of extensions: 352187
Number of successful extensions: 986
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)