Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_L04
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    30   0.35 
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   10.0 

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -1

Query: 351 GGSRAPPPP----LRSXISNLSNTCDLTPXPEWSCEQSAW 244
           G SR+PPP     +RS    L    D+TP  +W  ++S W
Sbjct: 96  GRSRSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +1

Query: 1   FFFFFXLISAARVYCL--SALFIIL 69
           FFF+  ++ +  ++CL   ALFI+L
Sbjct: 259 FFFYLPIVMSILIFCLPTQALFIVL 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,210,417
Number of Sequences: 5004
Number of extensions: 11485
Number of successful extensions: 38
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)