Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_L03
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    29   1.2  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    29   1.2  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    26   6.3  
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    26   8.4  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    26   8.4  

>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 314 LTTRKLAERLGVQQPALYWHFRNKR 240
           +  +KLAE LG+ QP + WH    R
Sbjct: 210 MVQQKLAEELGLLQPEIAWHTERDR 234


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 603 LESGGWIGPGVFYGGQNSVDGV 668
           L  GGW+ P ++Y G++SV  V
Sbjct: 103 LPYGGWVAPNIYYMGRSSVINV 124


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 847 TGFPSSTP*RQWEFVLHQINGTFQNVVTT 761
           +GFPSST    WE V H    T+ +  T+
Sbjct: 286 SGFPSSTASGNWE-VFHDFMSTYASTTTS 313


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = -1

Query: 701 SSFSEPVRSPGDAIHAVLTSIEDTGTDPASGL*PRPRDG*QFHTGNSYD 555
           + ++EP+     +  A+ +  +DT T    G  P  +DG  ++T   +D
Sbjct: 95  NQYAEPIEESSPSYQALSSMAKDTKTYLFGGSIPERKDGKLYNTAMVFD 143


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 749 SMGRSCYDILESPVDLVQNKLPLTSWG 829
           ++   C D L  PV LV  +  +T WG
Sbjct: 479 ALAAGCNDFLTKPVSLVWLEKKITEWG 505


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,687,033
Number of Sequences: 5004
Number of extensions: 74898
Number of successful extensions: 182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)