Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_T7_L03
(899 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0022 - 146406-146498,146616-146693,146967-147020,147729-14... 33 0.23
03_05_0045 - 20220955-20221046,20221599-20221641,20221715-202217... 31 0.94
07_03_0658 - 20366559-20367562,20367745-20367937 30 2.9
08_02_0635 + 19551869-19551996,19553131-19553233 29 5.0
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406... 29 5.0
03_05_0958 - 29200048-29200731 29 5.0
02_05_0040 + 25341418-25341810 29 5.0
12_02_0954 - 24757417-24758214 29 6.7
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137 29 6.7
10_02_0113 + 5410413-5410471,5411330-5413309,5413535-5413594,541... 28 8.8
07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822... 28 8.8
06_03_0108 - 16732215-16732572,16732623-16732741,16733344-167333... 28 8.8
>07_01_0022 -
146406-146498,146616-146693,146967-147020,147729-147792,
147900-148018,148207-148278,148544-148596,148746-148836,
148956-149099
Length = 255
Score = 33.5 bits (73), Expect = 0.23
Identities = 23/75 (30%), Positives = 37/75 (49%)
Frame = +3
Query: 525 FYSVT*IGLMVIAVSCVKLLSVPRPRLESGGWIGPGVFYGGQNSVDGVSRRSDGFTKRAL 704
F+S++ +V AV+ ++L+ + R R+ GW VF+ V+GV GF
Sbjct: 33 FFSLSAAYALVSAVALIQLIRIQR-RVPEFGWTTQKVFHLMNFLVNGVRALVFGFHLHVF 91
Query: 705 LI*TSHRTRPTXHLR 749
L+ R+ PT LR
Sbjct: 92 LLSAKARSLPTDKLR 106
>03_05_0045 -
20220955-20221046,20221599-20221641,20221715-20221792,
20222401-20222454,20222766-20222829,20222915-20222960,
20223049-20223121,20223530-20223601,20224023-20224075,
20224149-20224239,20226459-20226650
Length = 285
Score = 31.5 bits (68), Expect = 0.94
Identities = 23/75 (30%), Positives = 37/75 (49%)
Frame = +3
Query: 525 FYSVT*IGLMVIAVSCVKLLSVPRPRLESGGWIGPGVFYGGQNSVDGVSRRSDGFTKRAL 704
F+S++ +V AV+ V+L+ + + R+ GW VF+ V+GV GF +
Sbjct: 49 FFSLSAAYALVSAVALVQLIRI-QLRVPEFGWTTQKVFHLMNFVVNGVRAVVFGFHAQVF 107
Query: 705 LI*TSHRTRPTXHLR 749
L T + PT LR
Sbjct: 108 LFQTKAKNLPTDKLR 122
>07_03_0658 - 20366559-20367562,20367745-20367937
Length = 398
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = +3
Query: 165 VVVGSRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADLVQQV 344
V+ G+ H + M L +HG V + L+P L FRQ + DL V
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDLFWVV 310
Query: 345 QGG 353
G
Sbjct: 311 HPG 313
>08_02_0635 + 19551869-19551996,19553131-19553233
Length = 76
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 607 SPEAGSVPVSSMEVK-TAWMASPGDLTGSLNELCLYRPPTVHALPXICVNGAELLRHFGK 783
+P A +EV+ ++WMA G + S N++CL R +H I + +EL+
Sbjct: 15 APRASRTGWYWVEVEPSSWMARLGVVEWSFNKICLQRTNFIHLQLIIGSDASELVEEANS 74
Query: 784 SR 789
R
Sbjct: 75 CR 76
>07_01_0004 +
35300-35533,35617-35732,39044-39287,39451-40578,
40657-40833
Length = 632
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 531 YRTSLYKKAGWYRSGIPRALCDIHCAGADSLSLISWW 421
Y+TSL + G ++ G+PR C AG D L W
Sbjct: 285 YQTSLSPRCGAFKDGVPRMSC-AKIAGRDKLKRRGDW 320
>03_05_0958 - 29200048-29200731
Length = 227
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 576 KLLSVPRPRLESGGWIGPGVFYGGQNSVDGVSRRSDG 686
+L+ R R +SGG G G G +S DG S+ SDG
Sbjct: 150 RLIEYVRSRNKSGGGGGGGGVAAGCSSSDGDSKSSDG 186
>02_05_0040 + 25341418-25341810
Length = 130
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +2
Query: 110 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 208
RRAAP CG S+ S +RR AP S P
Sbjct: 74 RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106
>12_02_0954 - 24757417-24758214
Length = 265
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 54 TLERPRPAARAHGAIVLAVGEQRLPEAAG---IPDQK*APVVVGSRH 185
T +RPRP+ A A+ A+ A+G Q+ AP VV S+H
Sbjct: 100 TRKRPRPSRPARAAVAAAIAAAAAASASGSQIAAQQQQAPPVVMSQH 146
>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
Length = 542
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 594 AGRITISHRKQL*P-LGLFR*HYRTSLYKKAGWY 496
AG + +SH + P L +FR ++ L+K GWY
Sbjct: 130 AGFLVLSHHAGVPPSLAVFRHFFKLCLFKSNGWY 163
>10_02_0113 +
5410413-5410471,5411330-5413309,5413535-5413594,
5416037-5418047
Length = 1369
Score = 28.3 bits (60), Expect = 8.8
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = -1
Query: 545 YLGDTIEQVCTKKQAGTGPEFLEHCVISIVLARILYH**VGGHIMFISDKVSSMTKLQPN 366
YLG K TG EF+ H I +V+ I + + +++F+ K+ S ++
Sbjct: 643 YLGPNCGAQFHAKHLSTGGEFVTHVRILLVVLGIPF---LSSNLVFLMLKLLSSCLIRLR 699
Query: 365 TVIRAALDLLNE 330
+ + AL L NE
Sbjct: 700 SSLARALQLWNE 711
>07_03_0918 - 22581625-22581687,22581773-22581868,22581980-22582268,
22582341-22582477,22582567-22582683,22583277-22583440,
22583542-22583756,22583838-22584004,22584206-22584559,
22584647-22584795,22584907-22585030,22585132-22585371,
22585723-22586140,22586297-22586920,22586999-22587183,
22587302-22587412,22587583-22587789,22587869-22587967,
22588063-22588159,22588296-22588384,22588495-22588548,
22588671-22588793,22588872-22588940,22589020-22589089,
22589202-22589260,22589367-22589570,22590032-22590060,
22590375-22590433,22590513-22590634,22591637-22591830,
22591974-22592088
Length = 1680
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -1
Query: 479 EHCVISIVLARILYH**VGGHIMFISDKVSSMTKLQPNTVIRAALDLLNEVG 324
+ V+SI L +++ VGGH SD + + ++ + L+LLN VG
Sbjct: 1286 DQTVVSIALGALVHLIEVGGHQFSDSDWETLLKSIRDASYTTQPLELLNSVG 1337
>06_03_0108 -
16732215-16732572,16732623-16732741,16733344-16733393,
16734619-16734820
Length = 242
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 600 RLESGGWIGPGVFYGGQNSVDGVSRRSDGFTKR 698
R SGG GP V YGG+ GV R+ D +R
Sbjct: 140 RRGSGG-TGPAVDYGGRGDSGGVRRKEDSSGER 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,562,550
Number of Sequences: 37544
Number of extensions: 593867
Number of successful extensions: 1546
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1545
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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