Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_L01
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   6.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   8.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.5  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 868 VHQWRDSG*LTGFPSSTPID 809
           V QW     + GFPS+  ID
Sbjct: 333 VQQWNSYWGILGFPSAPTID 352


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 666  DLTVH*TSSAYIDLPPYTPYRPFASMGRSCYDILESPLILVPNKLPLTS-MGVELGNPV 839
            D   H TSS   D+ P +  +     GRS    L +  +L P  +  T+ +G   GN V
Sbjct: 1816 DFIYHGTSSTSSDISPMSEQKSLPRRGRSSRSSLRT--LLPPISVAETTFVGGNQGNVV 1872


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 666  DLTVH*TSSAYIDLPPYTPYRPFASMGRSCYDILESPLILVPNKLPLTS-MGVELGNPV 839
            D   H TSS   D+ P +  +     GRS    L +  +L P  +  T+ +G   GN V
Sbjct: 1812 DFIYHGTSSTSSDISPMSEQKSLPRRGRSSRSSLRT--LLPPISVAETTFVGGNQGNVV 1868


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 868 VHQWRDSG*LTGFPSSTPID 809
           V QW     + GFPS+  ID
Sbjct: 333 VQQWNSYWGILGFPSAPTID 352


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 691 LLI*TSHRTRPTXHLRQWGGVVTTFW 768
           L++   HR   T  + +W  VV  +W
Sbjct: 314 LILNYHHRNADTHEMSEWVKVVFLYW 339


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/39 (23%), Positives = 16/39 (41%)
 Frame = +2

Query: 599 SGGWIGPGVFYGGQNSVDGVSRRSDGSLNELCLYRPPTV 715
           SG      +  G  N     SR +  +   +  ++PPT+
Sbjct: 601 SGSGSAENLSSGSNNQTSSASRENTSNTTSMESFKPPTL 639


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,046
Number of Sequences: 438
Number of extensions: 5673
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)