Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_K16
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    25   0.81 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.9  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   10.0 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   10.0 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   10.0 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   10.0 

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 12/46 (26%), Positives = 18/46 (39%)
 Frame = +2

Query: 554 KXLGVSYGGSFFVCQREXXXXXXXXXXXXMQSIISSWANTESTGIG 691
           K LG S G    +C  E            +Q++ ++W   E   IG
Sbjct: 104 KTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVXNNWLLLEGHSIG 149


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 793 EAVKPGTKEGSHYXIXLTXVPLRTK*NGPENXWRTYPCR 677
           E   PG      Y + L    L  +  GPE+ ++TY CR
Sbjct: 145 EEFVPGDDYDGKYLV-LPSGELHIRDVGPEDGYKTYQCR 182


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 417 RMAKLLKTMHLLSMICLRNPLHRWE 343
           R+AKLL  + LL +  L   + +WE
Sbjct: 209 RLAKLLSLVRLLRLSRLVRYVSQWE 233


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 417 RMAKLLKTMHLLSMICLRNPLHRWE 343
           R+AKLL  + LL +  L   + +WE
Sbjct: 209 RLAKLLSLVRLLRLSRLVRYVSQWE 233


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 417 RMAKLLKTMHLLSMICLRNPLHRWE 343
           R+AKLL  + LL +  L   + +WE
Sbjct: 209 RLAKLLSLVRLLRLSRLVRYVSQWE 233


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 227 LFVCTRRDFLRVMIRFL 277
           ++ C  RDF R  +R L
Sbjct: 389 IYACWSRDFRRAFVRIL 405


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,215
Number of Sequences: 438
Number of extensions: 4588
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)