Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_K12
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   2.0  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    24   2.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    24   2.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   8.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   8.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   8.1  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 406 TNQPQHPSAGHGEAHHEASTLH 471
           T  P H + GHG +H  A+  H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHH 432



 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 560 VCVAQKHHRNVDI*SFS*WV 619
           + +   HHRN D    S WV
Sbjct: 313 ILILNYHHRNADTHEMSEWV 332


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 417 TTSQRWSRGSTPRSLNTS 470
           T +Q WSRG+T  SL+ S
Sbjct: 18  TQAQHWSRGNTWLSLDNS 35


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 417 TTSQRWSRGSTPRSLNTS 470
           T +Q WSRG+T  SL+ S
Sbjct: 18  TQAQHWSRGNTWLSLDNS 35


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 454 RGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAR 356
           R +LPR ++  +   LF Y  P  SE ++  +R
Sbjct: 603 RLLLPRGKKEGMPFQLFLYVSPVSSEYNQYNSR 635


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 454 RGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAR 356
           R +LPR ++  +   LF Y  P  SE ++  +R
Sbjct: 603 RLLLPRGKKEGMPFQLFLYVSPVSSEYNQYNSR 635


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 95  CINTLHWLIILHES 54
           C N ++W+I LH S
Sbjct: 418 CFNLMYWIIYLHIS 431


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 95  CINTLHWLIILHES 54
           C N ++W+I LH S
Sbjct: 418 CFNLMYWIIYLHIS 431


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 359 GLLFILFTFFRVTVEEQ 409
           G+LF+LF+F R   + Q
Sbjct: 20  GVLFVLFSFLRTRTKLQ 36


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 359 GLLFILFTFFRVTVEEQ 409
           G+LF+LF+F R   + Q
Sbjct: 20  GVLFVLFSFLRTRTKLQ 36


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = -1

Query: 382 SEKDEQQAREQXXXXXXXXXXXXVHEDWNETLEPVASW 269
           +++ +QQ ++Q              + W    EP ASW
Sbjct: 437 AQQPQQQQQQQQQQQQQQQQQQQQQQHWPMEEEPAASW 474


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,674
Number of Sequences: 438
Number of extensions: 3966
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)