Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_T7_K07
(770 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 33 0.034
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 30 0.32
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 29 0.74
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 28 1.3
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 28 1.3
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 27 3.9
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei... 26 5.2
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 26 6.9
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.9
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 26 6.9
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 25 9.1
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 25 9.1
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 33.5 bits (73), Expect = 0.034
Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 4/147 (2%)
Frame = -1
Query: 656 LSDAKITVLPDDAFLGLNVLERLNVWGNEIANVTAGTFRGLHSVTVLSLNKNRIQALPAG 477
LS +T +P F + L+ L V GNE+AN++ + + + L N NR+ + P
Sbjct: 837 LSYNYLTEIPSKFFQNFSDLKHLFVSGNELANLSISSTAQV-LLETLYANGNRLSSFPKN 895
Query: 476 -LFASTPRLLNLT---MMRNSFRYLDSEIFRGLDHIQEIKISNNVPLTLKEAVFSNLPAL 309
+ + R L+++ + + + + L ++ + +S N E +N
Sbjct: 896 EALSKSLRFLDISTNNLQNLAVEKAEKKSLTKLPQLEYLNLSGNTWFRFSEHEDTNFTKS 955
Query: 308 RTLQLDLGSIRELPEEFISNSPLRTLS 228
L SI +L +F SN+P L+
Sbjct: 956 YLKNLKFLSIMDLNTKF-SNAPSDVLN 981
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 154 LSYNAVAELAPELFADLRALETFVMDGNEL 65
LSYN + E+ + F + L+ + GNEL
Sbjct: 837 LSYNYLTEIPSKFFQNFSDLKHLFVSGNEL 866
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 30.3 bits (65), Expect = 0.32
Identities = 29/108 (26%), Positives = 44/108 (40%)
Frame = -3
Query: 588 QRVGERDRQRHGGDLPRSAQRDGALPEQKPHPGAAGRPVRQHAAPSQPHHDEELVPLSRL 409
QR G QR G P + + P +P G+ +A P+H + P
Sbjct: 464 QRTGMMQPQRTGFSQP--FESNNPFPVMQPQRTGFGQT--PNAPMMAPNHTGYVHP-QPT 518
Query: 408 GDLPRTRSHTGDQNL*QRSAYSQRGGVLEPPGTEDVTTGPRLDPRAPG 265
G +T +TG+ N R SQ G+L+ + + PRL+P G
Sbjct: 519 GLQRQTTGYTGNNNPYSRPLQSQSTGILQ---QQQQQSAPRLEPTKTG 563
>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 288
Score = 29.1 bits (62), Expect = 0.74
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Frame = -1
Query: 407 EIFRGLDHIQEIKISNNVPLTLKEAVFSNLPALRTLQLDLGSIRELPEEFISNSPLRTLS 228
E+F + I KIS + +TL + +S L +R+L EF+ N P LS
Sbjct: 13 ELFGQISKISHSKISISELITLLDIHYSELFTKNPWMKK--EVRKLASEFVENDPNHLLS 70
Query: 227 L--ARSQLRALPRSVLRGQTQLTSLXPEL 147
A + A + T LTS+ P L
Sbjct: 71 KQDACHLIEAFVNVSITSPTLLTSVDPVL 99
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 28.3 bits (60), Expect = 1.3
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Frame = -3
Query: 648 RQNHGAAGRRLPGAE-RAGAAQRVGERDRQRHGGDLPRSAQRDGAL-----PEQKPHPGA 487
++ GRR+ G E + G ++ VGE R+R G + R GA+ E PH
Sbjct: 60 KRKFDVGGRRVKGTEGKPGVSRGVGEELRRRTIGAELKKRNRSGAIIDRRFGENNPHLSV 119
Query: 486 AGRPVRQHAAPSQPHHDEELVPL 418
+ + + + Q EL L
Sbjct: 120 EEKMLERFSREQQRRSKRELYNL 142
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 311 LRTLQLDLGSIRELPEEFISNSPLRTLSLARSQLRALPRS 192
LR L + +RE PE L L ++R++++ LP S
Sbjct: 77 LRYLNIRSNVLREFPESLCRLESLEILDISRNKIKQLPES 116
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = -1
Query: 608 LNVLERLNVWGNEIANVTAGTFRGLHSVTVLSLNKNRIQALPAGLFASTPRLLNLTMMRN 429
L LE L++ N+I + +F L ++ VLS++KNR+ LP A P L L + N
Sbjct: 97 LESLEILDISRNKIKQLPE-SFGALMNLKVLSISKNRLFELPT-YIAHMPNLEILKIENN 154
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 716 ATSRSTPTCSPARRPSSTWELSDAK 642
+T+ STP C P R P ST + + K
Sbjct: 368 STTVSTPLCPPKRFPKSTKDFKEQK 392
>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 644 KITVLPDDAFLGLNVLERLNVWGNEIANVTAGTFRGLHS 528
KI VL FLG N+ + G E+ +V+ GLH+
Sbjct: 2 KIVVLGGSGFLGHNICKLAIAKGYEVVSVSRRGAGGLHN 40
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -1
Query: 686 PARRPSSTWELSDAKITVLPDDAFLGLNVLERLNVWGNEIANVTAGT 546
P+ R + + S + P+D LG ++ + W NE+ N++A T
Sbjct: 241 PSIRTNVRYSNSKPSTPLSPEDVDLGTYTVKNRDSWSNEV-NLSAST 286
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 571 SFPHTLSRSSTFSPRKASSGSTVILASDSS 660
S P T S S + + +SSG++VI ASD S
Sbjct: 69 SQPSTSSSSPSSTSTSSSSGTSVITASDVS 98
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -1
Query: 764 AEDXPEADALPG*MPDATSRSTPTCSPA--RRPSSTWE 657
A+D + ALP +T R+TP+ + A PSST+E
Sbjct: 26 ADDIDDLPALPQDRTTSTYRATPSSADAGYNAPSSTFE 63
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 35 PREQRVRQHLQLVAVHDEGLERPQVGEQL 121
PRE V ++ +A HDE L R ++ EQL
Sbjct: 364 PREVVVDSAIRDLAYHDEILSRMKLNEQL 392
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.4 bits (53), Expect = 9.1
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 266 EEFISNSPLRTLSLARSQLRALPRSVLRGQTQLT 165
++ ISNS + LSL S RALP S L ++ T
Sbjct: 17 QDIISNSYQKPLSLVDSTDRALPDSSLSSLSRST 50
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,372
Number of Sequences: 5004
Number of extensions: 43357
Number of successful extensions: 182
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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