Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_K02
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   119   4e-28
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   119   4e-28
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    30   0.33 
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.76 
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.1  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   7.1  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    25   9.4  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   9.4  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   9.4  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  119 bits (287), Expect = 4e-28
 Identities = 61/105 (58%), Positives = 71/105 (67%)
 Frame = -2

Query: 596 GTQRSYPVRHNKGLRKVACIGAWHPFRVSFTVARXGQKGYHHRTEMNKKIYXIGQGIHKK 417
           GT+R  P + ++GLRKVACIGAWHP  V +TVAR G  GY HRT++N KIY IG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 416 DGKVIKNNASTEYDLXEKSITPMGGFPHYGEVNNDFVMMQGLLHG 282
           D K    NAST++D  EK ITPMGGF  YG V NDFVM+ G   G
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330



 Score = 92.7 bits (220), Expect = 5e-20
 Identities = 41/73 (56%), Positives = 52/73 (71%)
 Frame = -1

Query: 777 QKKAHIMESNLTVVPFEDKVKWXREHXEKPIPVDSVFAQDEMIDCIGVTKXKGYKGVTSR 598
           QKKAH+ME  +      DKV+W REH EK + + S F Q+EMID IGVT+ KG +G T+R
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232

Query: 597 WHTKKLPRKTQQG 559
           W TK+LPRKT +G
Sbjct: 233 WGTKRLPRKTHRG 245



 Score = 87.0 bits (206), Expect = 3e-18
 Identities = 39/61 (63%), Positives = 47/61 (77%)
 Frame = -3

Query: 295 GCCMGPXKRIITLRKSLRVHTKRAALEKINLXFIDTSSKFGHXRFQTPADKAAFMGTLKK 116
           G   GP KR++TLRKSL  HT R ALE ++L +IDT+SKFGH RFQTPA+   F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385

Query: 115 D 113
           D
Sbjct: 386 D 386


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  119 bits (287), Expect = 4e-28
 Identities = 61/105 (58%), Positives = 71/105 (67%)
 Frame = -2

Query: 596 GTQRSYPVRHNKGLRKVACIGAWHPFRVSFTVARXGQKGYHHRTEMNKKIYXIGQGIHKK 417
           GT+R  P + ++GLRKVACIGAWHP  V +TVAR G  GY HRT++N KIY IG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 416 DGKVIKNNASTEYDLXEKSITPMGGFPHYGEVNNDFVMMQGLLHG 282
           D K    NAST++D  EK ITPMGGF  YG V NDFVM+ G   G
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330



 Score = 92.7 bits (220), Expect = 5e-20
 Identities = 41/73 (56%), Positives = 52/73 (71%)
 Frame = -1

Query: 777 QKKAHIMESNLTVVPFEDKVKWXREHXEKPIPVDSVFAQDEMIDCIGVTKXKGYKGVTSR 598
           QKKAH+ME  +      DKV+W REH EK + + S F Q+EMID IGVT+ KG +G T+R
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232

Query: 597 WHTKKLPRKTQQG 559
           W TK+LPRKT +G
Sbjct: 233 WGTKRLPRKTHRG 245



 Score = 87.0 bits (206), Expect = 3e-18
 Identities = 39/61 (63%), Positives = 47/61 (77%)
 Frame = -3

Query: 295 GCCMGPXKRIITLRKSLRVHTKRAALEKINLXFIDTSSKFGHXRFQTPADKAAFMGTLKK 116
           G   GP KR++TLRKSL  HT R ALE ++L +IDT+SKFGH RFQTPA+   F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385

Query: 115 D 113
           D
Sbjct: 386 D 386


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 669 FAQDEMIDCIGVTKXKGYKGVTSRW 595
           F   + +D  G+TK KG+ GV  RW
Sbjct: 145 FKPKQYVDVKGITKGKGFAGVMKRW 169


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +3

Query: 405 NFAILFVDSLSNTIDFLVHFSTVMITFLTXTSYSERHPKRMPSSNAGNFPKTLVVSYGVA 584
           NFA+L+  SL ++ +F++H +T    +   T+Y   +   +  +N  N  K   + + + 
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY--ENSLGIGRANVSN--KEKAIKHVLY 432

Query: 585 SLCANEK 605
           SL AN +
Sbjct: 433 SLPANSR 439


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 134 HGYTQEGSYSRRSCGYHNPS 75
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 372 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLT 491
           ++ L RC++   F +LF  S S +  FL   S + I + +
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFS 148


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 592 VPTRSDTFVSFXLGDTNAVNHFILGKHRIDRDRFL 696
           VPT +  F+   +     ++H ILG++ I  D F+
Sbjct: 381 VPTNNSLFLLKNIPSFGGLHHCILGRYSISLDDFV 415


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 417 LFVDSLSNTIDFLVHFSTVMITFLTXTSYSERHPKRMPSSNA 542
           LF+D LS   D L+H   ++ +    T  S  H      SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 661  LGKHRIDRDRFLXMFSGPFHFVLEWYHR*VGFH--NVSLLLAL 783
            +G+  + R+ F      PF  +L +Y+   GFH  NV +++++
Sbjct: 1236 MGEQSLSREYFYLGTQLPFFRMLSFYYAHAGFHLNNVFIMISM 1278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,117
Number of Sequences: 5004
Number of extensions: 58562
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)