Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_T7_J09
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   101   9e-23
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    99   6e-22
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    28   1.4  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    27   2.4  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.5  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   7.3  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   7.3  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    26   7.3  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   9.7  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  101 bits (243), Expect = 9e-23
 Identities = 60/132 (45%), Positives = 76/132 (57%), Gaps = 4/132 (3%)
 Frame = -2

Query: 705 FXAHT-VYAYWGRFTPGXL---LTRSKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LL 538
           F AHT   A  GRFTPG     +TR+      L+  +          + +        + 
Sbjct: 92  FAAHTGATAIAGRFTPGNFTNYITRT-YREPRLI--VVTDPRADAQAIKEASFVNIPVIA 148

Query: 537 LCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRD 358
           LC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+FYRD
Sbjct: 149 LCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRD 208

Query: 357 PEESEKDEQQAK 322
           PEE E++E+  K
Sbjct: 209 PEEVEREEEAKK 220



 Score = 57.2 bits (132), Expect = 3e-09
 Identities = 27/48 (56%), Positives = 32/48 (66%)
 Frame = -1

Query: 682 LLGTFHTRXFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIA 539
           + G F    FTN I   +REPRL++V DP  D Q I EAS+VNIPVIA
Sbjct: 101 IAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIA 148


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 99.1 bits (236), Expect = 6e-22
 Identities = 58/130 (44%), Positives = 75/130 (57%), Gaps = 4/130 (3%)
 Frame = -2

Query: 705 FXAHT-VYAYWGRFTPGXL---LTRSKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LL 538
           F AHT   A  GRFTPG     +TR+      L+  +          + +        + 
Sbjct: 93  FAAHTGATAIAGRFTPGNFTNYITRT-YREPRLI--IVTDPRADAQAIKEASFVNIPVIA 149

Query: 537 LCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRD 358
           LC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLRG + R   W+V+ DL+FYRD
Sbjct: 150 LCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRD 209

Query: 357 PEESEKDEQQ 328
           PEE E++E+Q
Sbjct: 210 PEEIEREEEQ 219



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 28/48 (58%), Positives = 32/48 (66%)
 Frame = -1

Query: 682 LLGTFHTRXFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIA 539
           + G F    FTN I   +REPRL+IV DP  D Q I EAS+VNIPVIA
Sbjct: 102 IAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIA 149


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +2

Query: 371 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 469
           N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 543 LLLCNTDSPLRFVDIAIPCNTKSSHSI 463
           L LC+ +S  RF D+A+  NTK +H I
Sbjct: 85  LQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 465 IGLMWWLLAREVLRLRGVLPRDQRWD 388
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 410 FPVTSAGML--WLICSSTVTLKKVKRM 336
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 455 IKPIEWEDLVLHGIAMSTNLSGESVLHKSNHRNVD 559
           ++ IE E  V+HG      L+    +H+  H N++
Sbjct: 12  VRKIERERSVIHGALSMKRLTQNQTVHQQLHSNIE 46


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 631 FREPRLLIVLDPAQDHQPITEASYVNIPVIAFVQHRLPTKICGHCYP 491
           FRE  L   + PA D    T+AS V +   + V  +LP+    H  P
Sbjct: 258 FRELLLESTIPPATDSAKTTDASLVMMGFPSKVVEQLPSLCACHSIP 304


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = -2

Query: 540 LLCNTDSPLRFVD--IAIPCNTKSSHSI-GLMWWLLAREVLRLRGVLPRDQRWDV 385
           +L   D  ++  D  +A   N    HS+ G  +W+ A EV+ L G       W V
Sbjct: 137 ILTTKDGTIKLADFGVATKINALEDHSVVGSPYWM-APEVIELVGATTASDIWSV 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,804
Number of Sequences: 5004
Number of extensions: 53592
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)